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GT18428

CSHL Arabidopsis genetrap mutant lines

Original: GT18428

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT18428

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 20975161 [Map]; Strand: c
      • AT3G56620.1 - [+] show detail - nodulin MtN21 /EamA-like transporter family protein
        Distance: -550; Region: promoter
    Flanking Genome Sequence: GT18428 - 3-prime edge 
    GTAGAGGTAT TTTACCGACC GTTACCGACC GTTTTCATCC CTATATACAC 
    ATTCTACCCG ATGGGATCGT ACCAGAATAT ACATTCTCTC TCGACGAGAG 
    TAACCATATC CATAGGAATG TGATCCTAAT TAAAATATTT CCTGTGAATG 
    CTGATGCAAT ACATAGCAAC AGAGAACCCA ATAAATTAAA AAGATCAGCA 
    AATCTCAGAG ATTAATTATT GCGATATGTT TTTCTTATGA AAATATGTTG 
    CAAGTGCTTC ATTATTTAAT AATTAAAAAA AATCAAGTTG GGCATGATCC 
    ATTACCTCCT CTAGAATATG CATTAATATC ACTTTATGTG AGACTATTGG 
    ATACTTCTTG ATAAAGTTAG GGAAGATTTT TGTGAAACTC ATCTTCAAAT 
    CTATTTAATT TACCAGTAAA TATATATAAA AAAATCCATT TAGACGTCAT 
    CTATAGATAA CTGTTCCAAA TGCTTCGACA TATATGATCG ATTCGAATAT 
    ATTCTGGCTT TTTAGATTTG AGATTTTATG CTTCCAAACC CATGGATCAC 
    ATGCATATAA ATCTGAACTA TATTAATTGA CACACGAAAT GAACTGACCC 
    GGTCCCATGG GAATAAAACA TGGGTACATA TATGGAGATG CTAAATTCTC 
    GATTATATAA TTGTGATTAT AGATTTGATT AGGAAAAAAA TTAGATAGAC 
    AATAAGGATA AAGTGGGATG AAGAATGTGG GTGCGTTTTT GGTTACCAAC 
    TAGAAATGGA AACAAAGAGG CAAACAATTC CAAATGGGCA TCTA

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 1157361 [Map]; Strand: c
      • AT3G04350.1 - [+] show detail - Plant protein of unknown function (DUF946)
        Distance: -585; Region: promoter
      • AT3G04360.1 - [+] show detail - Calcium-dependent lipid-binding (CaLB domain) family protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: GT18428 - 5-prime edge 
    CACTTTCTCC CTGGGTAAGC GGCTAAAAAG AGGACGCAAG TTCCATACTT 
    GAAGGGAAAA CAGAGGGAAT TGAGCATAGA GTTGAACGGT GGAGAGCAGA 
    GAAAAATGGC ACGGTTGGAG CGGGTGGAGC GGCTGGATCA AGCGATGATT 
    CTAGCGGGAA AGGAGGAGCG GGAAGGANAA GAAGGAGGAG GAGAAGAAAG 
    GAGAAACAAC AAGGGAGGAG AAACGGTGGA GGAGAGGGTA ANAAAGGGTT 
    GTTTTCATGG TTTGGAAACG TGGTTGGATG TGAGATTTCG ATAACATGGG 
    GCGGTGGAAG CGGCGGANAA GGAGACAGCA CAAAGAAGAG ATATAATAAC 
    AATAAAGTAG TAAATCTTAG TGGTGGAGAC GAAACGTTTA GTCATTCTGG 
    GACTTGGGAT AAGAGAAAGT GGTTACTTAT TTTTGGGTTC TTTTGGGGGT 
    GTAAAACGTT TGATGATGGG TTAAACCATA CAGATTTGAA AGTATTGGGG 
    TTAAAACGTA TGAATAAACT TTCCCGGTAC ATTTCTGGGA AATGGACTAA 
    TTTGAATATT TGGATAATAC TGGGGTTATT

AT3G04350.1

Model type
Protein coding
Short Description
Plant protein of unknown function (DUF946)
Computational Description
Plant protein of unknown function (DUF946); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF946 (InterPro:IPR009291); BEST Arabidopsis thaliana protein match is: Plant protein of unknown function (DUF946) (TAIR:AT5G18490.1); Has 389 Blast hits to 369 proteins in 101 species: Archae - 0; Bacteria - 21; Metazoa - 15; Fungi - 143; Plants - 203; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G04360.1

Model type
Protein coding
Short Description
Calcium-dependent lipid-binding (CaLB domain) family protein
Computational Description
Calcium-dependent lipid-binding (CaLB domain) family protein; CONTAINS InterPro DOMAIN/s: C2 membrane targeting protein (InterPro:IPR018029), C2 calcium/lipid-binding domain, CaLB (InterPro:IPR008973), C2 calcium-dependent membrane targeting (InterPro:IPR000008); BEST Arabidopsis thaliana protein match is: Calcium-dependent lipid-binding (CaLB domain) family protein (TAIR:AT1G04540.1); Has 385 Blast hits to 364 proteins in 38 species: Archae - 0; Bacteria - 22; Metazoa - 10; Fungi - 6; Plants - 333; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G56620.1

Model type
Protein coding
Short Description
nodulin MtN21 /EamA-like transporter family protein
Computational Description
nodulin MtN21 /EamA-like transporter family protein; LOCATED IN: membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF6, transmembrane (InterPro:IPR000620); BEST Arabidopsis thaliana protein match is: nodulin MtN21 /EamA-like transporter family protein (TAIR:AT2G40900.1); Has 3973 Blast hits to 3961 proteins in 822 species: Archae - 18; Bacteria - 2149; Metazoa - 8; Fungi - 0; Plants - 1241; Viruses - 0; Other Eukaryotes - 557 (source: NCBI BLink).
Link
InterPro Scan - TAIR