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GT18451

CSHL Arabidopsis genetrap mutant lines

Original: GT18451

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT18451

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 19112211 [Map]; Strand: c
      • AT5G47050.1 - [+] show detail - SBP (S-ribonuclease binding protein) family protein
        Distance: 3863; Region: intergenic
      • AT5G47060.1 - [+] show detail - Protein of unknown function (DUF581)
        Distance: -4577; Region: intergenic
    Flanking Genome Sequence: GT18451 - 5-prime edge 
    TATACGCTTA AGTGTTTTAC TTGAATTTCA GTTATTCAAA CTTACATTCG 
    TAACACGAAA AGCTAAAGTG CTTGCAAAGT TGCAAGTACT TTTCTCTCCA 
    GTTTGAATCA TACAAAACTT TTAAATGGAC TCGTGAGTAA CTTGTGTGTA 
    TCAGTCTGAC AACAAAATTC AACATGGTGA TGTCATTTCC AATAATGAAT 
    GCTTCTAGAC TTCACCTAAG AAACTAAAAT AAGGAAGTAG AGTTTTAAAA 
    TAGCAAAAGT ACTCTTTTTT TAATGAGGTT TTTTTTATCA ACCACTCCTC 
    TTTGCCGGGC ATTTCCCGGA AATCCATCGC CCCTAGACTA GACTCAGTTG 
    TCATTTATGA AACTTTCTTC A

AT5G47050.1

Model type
Protein coding
Short Description
SBP (S-ribonuclease binding protein) family protein
Computational Description
SBP (S-ribonuclease binding protein) family protein; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), S-ribonuclease binding protein, SBP1, pollen (InterPro:IPR017066); BEST Arabidopsis thaliana protein match is: SBP (S-ribonuclease binding protein) family protein (TAIR:AT4G17680.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G47060.1

Model type
Protein coding
Short Description
Protein of unknown function (DUF581)
Computational Description
Protein of unknown function (DUF581); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF581 (InterPro:IPR007650); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF581) (TAIR:AT4G17670.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR