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GT18457

CSHL Arabidopsis genetrap mutant lines

Original: GT18457

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT18457

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 23451783 [Map]; Strand: w
      • AT5G57900.1 - [+] show detail - SKP1 interacting partner 1
        Distance: -850; Region: promoter
      • AT5G57910.1 - [+] show detail - unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein ...
        Distance: 0; Region: exon3 (CDS)
    Flanking Genome Sequence: GT18457 - 5-prime edge 
    TTTGATCTTC TGACCTTTTT AATCTCTTGT GGCTGGTCTT GTCTCAAATG 
    TCTGTATCTC CGTCGCAGAA ATCTGTTAAA GAGGTTATAA ACGAACGATA 
    TATTAACAAG TGAGGAAAAC ATCAAAGGAA AGGACTAATG ATATATTTTG 
    TCAAGGATTG AAACTGTCTT TACCTGACTT CAGCCATTAG TGTTGCCTTT 
    CTTTCTCGCA CTGCCTGTAA CCTTTTTCTC ATAGCTTCGG TTTCCTAGTG 
    TATATAATCA ACCAACACAC GTTAACAAAA GCTCATAACC AAATGATCTC 
    AAAGATCAGA GTATCGAGCT GATAATATGT ACACAACAAG GTTTTAAATC 
    CTAAAACTAT GTTTAAGAGT TAAGACTAAT AGAGATTTGC ATAACTAACT 
    ACACATAGAA ATCTTAATAA GTAATTAACT TTGTTAAGGA AGCAGAAGCA 
    ATTAAACTTA AAAGTTTCTT CTTTCTATTA TTTTAAAGGA GAAAGTTGTT 
    CCTTTTTTCC GGGTTTTCCG AGTAGCTCTG AGCCCAGATC AATCTTTGAG 
    CAAATAAAAT TACATTCTCA GATCCAGAGA CCACTAAAAA CCAGACCAGA 
    AACTGAAACT TGATCTAAAA CTNCAGAAAA GAGAGTTCGT ACCATATGCA 
    ATTCTCCATA GTCTTGCATA AGGCTATGAT GCCTAAACCT GACCTTTGGA 
    TCCTCGAAAT GATTAGAGTT CAAGGGAGTG

AT5G57900.1

Model type
Protein coding
Short Description
SKP1 interacting partner 1
Curator Summary
F-box protein, interacts with SKP1/ASK1 subunit of SCF ubiquitin ligase in a glucose-dependent manner
Computational Description
SKP1 interacting partner 1 (SKIP1); CONTAINS InterPro DOMAIN/s: F-box domain, Skp2-like (InterPro:IPR022364); BEST Arabidopsis thaliana protein match is: RNI-like superfamily protein (TAIR:AT4G30640.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G57910.1

Model type
Protein coding
Computational Description
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G30630.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR