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GT18459

CSHL Arabidopsis genetrap mutant lines

Original: GT18459

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT18459

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    Not mapped

    Flanking Genome Sequence: GT18459 - 3-prime edge 
    GTTCGTTTTC GTTTTCCGTG TATCCCGTTT TCGTTCCCGT CCCGCAAGTT 
    AAATATGAAA ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG 
    TTTTCATCCC TATACACACA TTCTACCCGA CCGGATCGAA TCGGTTTAT

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 3872597 [Map]; Strand: c
      • AT3G12140.1 - [+] show detail - Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein
        Distance: -881; Region: promoter
      • AT3G12140.2 - [+] show detail - Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein
        Distance: -869; Region: promoter
      • AT3G12140.3 - [+] show detail - Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein
        Distance: -884; Region: promoter
      • AT3G12143.1 - [+] show detail - pseudogene, similar to polygalacturonase-inhibitor protein, blastp match of 5...
        Distance: 0; Region: exon1 (NonCoding)
    Flanking Genome Sequence: GT18459 - 3-prime edge 
    CGGTAGAGGT ATTTTACCGA CCGTTACCGA CCGTTTTCAT CCCTACATAC 
    ACATGTCAGC CCGACCGGAA CGAATCTTAT TAAAGATTCC GTTTTGGCTC 
    AGATCCAACG TAAGTATGCT CCTACCGAAC TCTCTCTTCG GAGATATCGA 
    ACTGAAACAT GTTTCTCGAC AGATCCAGTT GTCTTGTTGT TTTGTTCCGT 
    CCGAAAAACA TGGAACCATC TCCGGTTAAA CTGTTTCCCG ACAGAAACAC 
    AGCGTTGAAG TCGTGTTTTG ACAATGACTC CGGTATTTTC CCTGAAATGG 
    AGTGTCATAA AACCCGGGAT TTATAACTTT ATTAATAATA AAGAATGTTA 
    AAAATGATGG TTACCTGAGA GCTGATTGTT AGACAAGTCG AGTTCAGGGA 
    CGTTGCCAAC AAAAGAACCG AAAGAGTTTG GTATAGAACC GGTTAGCTTA 
    TTGTCGTGGA TCTCAATGGC TTCAAGCTTG GGCATCTGAG ATAGCGAACC 
    GGGAATTGGA CCGGGAAATT GGTTAAAGGA AAGGTCCAAG AACGTGAGGT 
    TCTTGAGGTC GCTGATGTTA TCAGGAATCG GACCGGAGAA ATTGGTGTGT 
    TTTATAAAGA GGAGGTTGAG ACTCTTGAGC ATGGTGATCG C

AT3G12140.1

Model type
Protein coding
Short Description
Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein
Computational Description
Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein; CONTAINS InterPro DOMAIN/s: Tudor-like, plant (InterPro:IPR014002), ENT (InterPro:IPR005491); BEST Arabidopsis thaliana protein match is: Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein (TAIR:AT5G06780.1); Has 265 Blast hits to 250 proteins in 29 species: Archae - 0; Bacteria - 0; Metazoa - 8; Fungi - 0; Plants - 254; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G12140.2

Model type
Protein coding
Short Description
Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein
Computational Description
Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein; CONTAINS InterPro DOMAIN/s: Tudor-like, plant (InterPro:IPR014002), ENT (InterPro:IPR005491); BEST Arabidopsis thaliana protein match is: Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein (TAIR:AT5G06780.1); Has 265 Blast hits to 250 proteins in 29 species: Archae - 0; Bacteria - 0; Metazoa - 8; Fungi - 0; Plants - 254; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G12140.3

Model type
Protein coding
Short Description
Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein
Computational Description
Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein; CONTAINS InterPro DOMAIN/s: ENT (InterPro:IPR005491), Tudor-like, plant (InterPro:IPR014002); BEST Arabidopsis thaliana protein match is: Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein (TAIR:AT5G06780.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G12143.1

Model type
Pseudogene
Computational Description
pseudogene, similar to polygalacturonase-inhibitor protein, blastp match of 53% identity and 7.5e-64 P-value to GP|18148923|dbj|BAB83520.1||AB064545 polygalacturonase-inhibitor protein {Citrus sp. cv. Sainumphung}
Link
InterPro Scan - TAIR