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GT18463

CSHL Arabidopsis genetrap mutant lines

Original: GT18463

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT18463

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    Not mapped

    Flanking Genome Sequence: GT18463 - 3-prime edge 
    TACCGGTATA TCCCGTTTTC GTTTCCGTCC CGCAAGTTAA ATATGAAAAT 
    GAAAACGGTA GAGGTATTTT ACCGACCGTT ACCGACCGTT TTCATCCCTA 
    TACACACATT CTACCCGACC GGATCGTATC GGTATATTCA TCTCACTCGA

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 6474582 [Map]; Strand: w
      • AT3G18779.1 - [+] show detail - unknown protein; LOCATED IN: endomembrane system; Has 30201 Blast hits to 173...
        Distance: 0; Region: exon1 (CDS)
      • AT3G18780.2 - [+] show detail - actin 2
        Distance: -260; Region: promoter
      • AT3G18780.1 - [+] show detail - actin 2
        Distance: -289; Region: promoter
    Flanking Genome Sequence: GT18463 - 3-prime edge 
    GTAGAGGTAT TTTACCGACC GTTACCGACC GTTTTCATCC CTAGTCGTGG 
    TTGGCTTGTT CAATTAGATT TCATACAATT CAACGTAATT TAATTCGTTT 
    TCTATTAGAA TTGTATCATA ATTAATTCAG ACCGTGAAAG AAAGTGTCTT 
    TCATGATGTG TTTATGGATA TTTATACAAT AAGATACAAT GTTTCATCAT 
    ATTCACTATT CACGATTAGT ATGTACATTA AATAATGGCT ACTACTACAT 
    CCGAACTCGT CAAAACGATT CTGAATCAAT TATACATATG CTGACTCTTG 
    CATACATAAA AAATAGTTGT TTAAATTTTG TCTAACTAAT GTTTGGTATA 
    AGTATAATGT TGAGTTGAGA TACCAATTAC ATCGAGTCTA GCCATTTTGT 
    CGTGCCATAT TCGTCAAAAC TTTCTTACAT AATGATAACC TAGATCTAGA 
    TGAGATATGT ATCAATGTAT TTGAGATCAT AATTAAGTTC GTTCTAAATT 
    TTGTCGACGT GACGAATAGT TTGTTGGTGT CCTCGTCACT TATATAGTTT 
    TGGGACTTTT GGCATCGATC CATGTATTAG TTAGCTAGCT ATTCTATGGT 
    GAAATATATT TAACTATACG CATATATTAT GATTTTATGT ATTTGAACTC 
    ATCTAGTTAG CTTAAAAACT GAACATATGA CCATCAGACC GTATATCAGA 
    TCNAATCATC ATCGTGCGAT GCGCTATGTA AGTGAAAGAT ATGAGCAATA 
    ACATGTAACC TCTCATGTTA TACAAAAGAA AAAGCAAACT AATCATTCAT 
    CATCATAAAC TTTTTTTATG GTTTGTTGAG ATTAAATCAA AGCT

  • 5 prime edge [+] show sequence

    Not mapped

    Flanking Genome Sequence: GT18463 - 5-prime edge 
    AGGGAGAAAA AAAAGGAGAA AA

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 6474645 [Map]; Strand: w
      • AT3G18779.1 - [+] show detail - unknown protein; LOCATED IN: endomembrane system; Has 30201 Blast hits to 173...
        Distance: 0; Region: exon1 (CDS)
      • AT3G18780.2 - [+] show detail - actin 2
        Distance: -197; Region: promoter
      • AT3G18780.1 - [+] show detail - actin 2
        Distance: -226; Region: promoter
    Flanking Genome Sequence: GT18463 - 5-prime edge 
    CTTTCTCCCT GACCACACGA CGACTAACGT TGCCTGGATT GACTCGGTTT 
    AAGTTAACCA CTAAAAAAAC GGAGCTGTCA TGTAACACGC GGATCGAGCA 
    GGTCACAGTC ATGAAGCCAT CAAAGCAAAA GAACTAATCC AAGGGCTGAG 
    ATGATTAATT AGTTTAAAAA TTAGTTAACA CGAGGGAAAA GGCTGTCTGA 
    CAGCCAGGTC ACGTTATCTT TACCTGTGGT CGAAATGATT CGTGTCTGTC 
    GATTTTAATT ATTTTTTTGA AAGGCCGAAA ATAAAGTTGT AAGAGATAAA 
    CCCGCCTATA TAAATTCATA TATTTTCTCT CCGCTTTGAA TTGTCTCGTT 
    GTCCTCCTCA CTTTCATCGG CCGTTTTTGA ATCTCCGGCG ACTTGACAGA 
    GAAGAACAAG GAAGAAGACT AAGAGAGAAA GTAAGAGATA ATCCAGGAGA 
    TTCATTCTCC GTTTTGAATC TTCCTCAATC TCATCTTCTT CCGCTCTTTC 
    TTTCCAAGGT AATAGGAACT TTCTGGATCT ACTTTATTTG CTGGATCTCG 
    ATCTTCTTTT CTCAATTTCG TTGAGATCTG GAATTCGTTT AATTTGGATC 
    TGTGAACCTC CACTAAATCT TTTGGTTTTA CTAGAATCGA TCTAAGTTGA 
    CCGATCAGTT AGCTCGATTA TAGCTACCAG AATTTGGCTT GACCTTGATG 
    GAGAGATCCA TGTTCATGTT ACT

AT3G18779.1

Model type
Protein coding
Computational Description
unknown protein; LOCATED IN: endomembrane system; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G18780.1

Model type
Protein coding
Short Description
actin 2
Curator Summary
Encodes an actin that is constitutively expressed in vegetative structures but not pollen. ACT2 is involved in tip growth of root hairs.
Computational Description
actin 2 (ACT2); FUNCTIONS IN: structural constituent of cytoskeleton; INVOLVED IN: in 7 processes; LOCATED IN: nucleus, membrane, cytoplasm; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Actin, conserved site (InterPro:IPR004001), Actin/actin-like (InterPro:IPR004000), Actin/actin-like conserved site (InterPro:IPR020902); BEST Arabidopsis thaliana protein match is: actin 8 (TAIR:AT1G49240.1); Has 14997 Blast hits to 14643 proteins in 3016 species: Archae - 6; Bacteria - 12; Metazoa - 5603; Fungi - 5165; Plants - 1589; Viruses - 2; Other Eukaryotes - 2620 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G18780.2

Model type
Protein coding
Short Description
actin 2
Curator Summary
Encodes an actin that is constitutively expressed in vegetative structures but not pollen. ACT2 is involved in tip growth of root hairs.
Computational Description
actin 2 (ACT2); FUNCTIONS IN: structural constituent of cytoskeleton; INVOLVED IN: in 7 processes; LOCATED IN: nucleus, membrane, cytoplasm; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Actin, conserved site (InterPro:IPR004001), Actin/actin-like (InterPro:IPR004000), Actin/actin-like conserved site (InterPro:IPR020902); BEST Arabidopsis thaliana protein match is: actin 8 (TAIR:AT1G49240.1); Has 15142 Blast hits to 14749 proteins in 3039 species: Archae - 6; Bacteria - 12; Metazoa - 5705; Fungi - 5217; Plants - 1599; Viruses - 2; Other Eukaryotes - 2601 (source: NCBI BLink).
Link
InterPro Scan - TAIR