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GT18466

CSHL Arabidopsis genetrap mutant lines

Original: GT18466

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT18466

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    Not mapped

    Flanking Genome Sequence: GT18466 - 3-prime edge 
    TATATCCCGT TTTCGTTTCC GTCCCGCACG TTAAATATGA AAATGAAAAC 
    GGTAGAGGTA TTTTACCGAC CGTTACCGAC CGTTTTCATC CCTATACACA 
    CGTTCTACCC GGACCGGATC

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 26113049 [Map]; Strand: c
      • AT5G65330.1 - [+] show detail - AGAMOUS-like 78
        Distance: 1698; Region: intergenic
      • AT5G65340.1 - [+] show detail - Protein of unknown function, DUF617
        Distance: 349; Region: intergenic
    Flanking Genome Sequence: GT18466 - 3-prime edge 
    TGAAACGGTA GAGTATTTTA CCGACCGTTA CCGACCGTTT TCATCCCTAT 
    ACACACATTC TACCCGACCG NATCGTATCG GTATATCCAT CTCACTCGAC 
    TACCGTTCGT TTTCGTTACC GGTATATCCC GTTTTCGATT CCGACCCGCA 
    AGTTAAATAT GAAAAACTGC CCATATATAA TAGTATTTTG TAAATGAATT 
    ACTATATCAT TTTGATACTT GAAATAAAAC AGTTATAGTA GTTTGTAAAG 
    TATAGTACTG TTGTAAATAA TAAACGATAT TTGAAATTTA GCTATGCAAT 
    TTGCTTGTAT GTGTATATAT ACACACATTC TATTTGTATA GATGGCCAAC 
    AGAAATCATT AACTTTATTC CCCAAATTAT TGACAATAAT AGAAAGCAAA 
    TATATAAGAT TAAAAAAACT TTGCACTATA AGAAACACAT GAACACATGG 
    TCACCACTAC AGCATACAAA AGTTGAGATC ATCAAAAGCT ATGCTTATTA 
    CATTTTCATC TAATTAAGCA CTGCTAAAAA AATCTACGAG ACACATTAAT 
    CGGTTAAGTT TGCCTTTTAA AAGGAAGAAA GAAAGAAAAA AACCACCGAT 
    GATGATGAAT CTCTAAATAA TCCCAATTAT AGTATCCAAT TGCACCGATT 
    GATATCCTTG TGCTAGAACA CACAAAACGA TCCAGGATCA TCTTTTTG

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 26112991 [Map]; Strand: c
      • AT5G65330.1 - [+] show detail - AGAMOUS-like 78
        Distance: 1640; Region: intergenic
      • AT5G65340.1 - [+] show detail - Protein of unknown function, DUF617
        Distance: 407; Region: intergenic
    Flanking Genome Sequence: GT18466 - 5-prime edge 
    CTTTCTCCCT GATTATGGTT GACGTTGATC AACGAAAAAA AAATGGGATT 
    GCCTACTTAA CTTGTAAATT TCGTGACAAT GAAAAAGTTC CGGCTATTGT 
    TTATTGTAAC TAGTTTTAAT TTGTCGAAAT TTTCAACAAT AATTAATACT 
    CCATAGTAGA TATAAAAAAA ATACTCGTAC GTGGGGATGA GGTCAACGAG 
    AGTCGAAGAC TCATCAGGGG AGAATAATAA GAGTCCACGC GGCGAATCCA 
    TCACTACAAG AACACTAACA ACTATCGATT AAAATAATAT TTTACATAAC 
    ACAGAACCGG ATAAGTTATG GGTATTATAA CATTATCTTC NNCTTTCGGG 
    AAGCTTTATA CTTTTGCTTA GAGGGAATCA AGAACAGCTA AAACAACCAG 
    CTGGCCACTT TCTCGGTCTC TTTCCAAGGT TCTTTTGTTT TGGGCCAAAG 
    AAATAGATCA ATACTTCACA AAATTCTACT CATTATTTTG GATGATCCGC 
    AAAATATTAC ATTTTTTTGA AACTTGATAA TCGAATTTTG AGAGGAACAA 
    AAAATTTAAG CTATATTGCA TAAAACTGGG AATAATCCTC CTCCCTTTGG 
    TTTGGCCAAC AAAAACTTGG ATTATTCAAT CGGGGTGAAA ACGAAATAAT 
    CCTTATAATC TTTAACAAAA AGTAATATAA TCTTAGTAGC AGGAAGGAAG 
    CATAAAATGA TAAATCTGA

AT5G65330.1

Model type
Protein coding
Short Description
AGAMOUS-like 78
Computational Description
AGAMOUS-like 78 (AGL78); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: central cell, sperm cell; CONTAINS InterPro DOMAIN/s: Transcription factor, MADS-box (InterPro:IPR002100); BEST Arabidopsis thaliana protein match is: AGAMOUS-like 52 (TAIR:AT4G11250.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G65340.1

Model type
Protein coding
Short Description
Protein of unknown function, DUF617
Computational Description
Protein of unknown function, DUF617; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF617, plant (InterPro:IPR006460); BEST Arabidopsis thaliana protein match is: Protein of unknown function, DUF617 (TAIR:AT2G22460.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR