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Mutant Lines
GT18478

GT18478

CSHL Arabidopsis genetrap mutant lines

Original: GT18478

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT18478

Determination of insertion point(s)

3 prime edge [+] show sequence

Not mapped

ATATACCCCC CCTTTTTTTT TTGAAAAAAA AGGGGGGGGG GGAACCGGGG 
GGGGTTTTTG GAAATTTTTG GAAACCGAAA GGGGGGTTGA GGGGGAAAGG 
GTTAAACGGG GAAAGGGGGG GCCCGGGCCT TCTTGGGATT GGGGGGGCTT 
TTTTAAAGGA AAGGAAAGGG GTTCGGTTTC AAACCTTTGG GGAGTTTTGG 
TTTTCCGGGA AATTCAATTT GGGGGAAAGC CCCGGTTCGG GGGGAAGGGA 
AAGTAATGAA TTCCAACCAA AAACTTGGGG ATTTTTTTAA AAAAACCAAA 
GTTCGGCAAA ACTTTTGGTT CCCAAGTAAG GGGGGGGGGG GGGAACCCGG 
TTTAATTGGG CCCCCGAAAA AACCAAAGGT GGCAAAAATT TTGATTCCGT 
CCAAACGGGG GGGGGGGGGG ACCCGGTTTA ATGGGGCCCC CAAAAAAACC 
AAAGTTGGCA AAATTTTTGG TTCCCGTCAA AGGGGG

5 prime edge [+] show sequence

Chromosome: 4; Position: 11208109 [Map]; Strand: c
- AT4G20940.1 - [+] show detail - Leucine-rich receptor-like protein kinase family protein
  Distance: 1829; Region: intergenic
- AT4G20960.1 - [+] show detail - Cytidine/deoxycytidylate deaminase family protein
  Distance: -3837; Region: intergenic

CTTTCTCCCT GCCGTTACCT CCGAAGATTC ACCGTACAAG CTCGACGCTT 
ACACCATTTC GACGAACTAA AGCTGCCTAC GATTGCACTT GCACATTTGA 
ATCACAGCAG AAGATCGATC ATGCGCTCAT CTTAAATGAC GCACCGATAA 
AGTTGTACTC GCCGATCTCA ATCCTTAAAC GAAACGCACG AATAACGAAG 
CAACGTTCTA TGATCTCAGC CGTCGACGCC CGTGGTCTCA TCATGCACTA 
CGACCTGAGC AATGATTCGT TCCCCGACTC GACCTTCTTG GCCATCTCGT 
CCATCTGCGT GATCGTCATC TTCCTTGCTA CTCTGAAGCA AAGCAGAGTA 
ACAAAGTTCA AACCTGAGCT CGGCAAACAG AGTTTAAACG CCAAATCCTC 
CGACCATGAG ATCACGAATA TTAAAGGATG TCACCTCAGC CTTCAACAAT 
TCAACGTTCG CATCCAATCT TGACATCATC TCGTTCGAC

AT4G20940.1

Model type: Protein coding
Short Description: Leucine-rich receptor-like protein kinase family protein
Computational Description: Leucine-rich receptor-like protein kinase family protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, ATP binding; INVOLVED IN: signal transduction, N-terminal protein myristoylation; LOCATED IN: plasma membrane; CONTAINS InterPro DOMAIN/s: Serine/threonine-protein kinase domain (InterPro:IPR002290), Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Protein kinase-like domain (InterPro:IPR011009), Protein kinase, catalytic domain (InterPro:IPR000719), Leucine-rich repeat, typical subtype (InterPro:IPR003591), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635); BEST Arabidopsis thaliana protein match is: Leucine-rich receptor-like protein kinase family protein (TAIR:AT5G10020.1); Has 124696 Blast hits to 48167 proteins in 1508 species: Archae - 53; Bacteria - 7002; Metazoa - 34401; Fungi - 1693; Plants - 72944; Viruses - 23; Other Eukaryotes - 8580 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT4G20960.1

Model type: Protein coding
Short Description: Cytidine/deoxycytidylate deaminase family protein
Curator Summary: encodes diaminohydroxyphosphoribosylaminopyrimidine deaminase catalyzing the second step in the riboflavin biosynthesis
Computational Description: Cytidine/deoxycytidylate deaminase family protein; FUNCTIONS IN: hydrolase activity, zinc ion binding, diaminohydroxyphosphoribosylaminopyrimidine deaminase activity; INVOLVED IN: riboflavin biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: APOBEC/CMP deaminase, zinc-binding (InterPro:IPR016192), CMP/dCMP deaminase, zinc-binding (InterPro:IPR002125), Cytidine deaminase-like (InterPro:IPR016193), Riboflavin biosynthesis protein RibD (InterPro:IPR004794); BEST Arabidopsis thaliana protein match is: cytidine/deoxycytidylate deaminase family protein (TAIR:AT3G47390.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link: InterPro Scan - TAIR