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GT18487

CSHL Arabidopsis genetrap mutant lines

Original: GT18487

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT18487

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 1240891 [Map]; Strand: w
      • AT4G02780.1 - [+] show detail - Terpenoid cyclases/Protein prenyltransferases superfamily protein
        Distance: 0; Region: intron10 (CDS)
    Flanking Genome Sequence: GT18487 - 3-prime edge 
    GTAGAGGTAT TTTACCGACC GTTACCGACC GTTTTCATCC CTAGGTATTT 
    TGATCATCTT CTTTATTTAA GTGACCCAAT TCATTTGCAA ATATCTAAAC 
    TTAAATGTTG GTCTGTTTTT TTCTTATGCT TAACTAAATC TGCCGGTAGT 
    TGTAACTTTT TATTTTTCTT CTCACTCGAC CAGAT

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 24424748 [Map]; Strand: w
      • AT1G65670.1 - [+] show detail - cytochrome P450, family 702, subfamily A, polypeptide 1
        Distance: -795; Region: promoter
    Flanking Genome Sequence: GT18487 - 3-prime edge 
    TTTTACCGAC CGTTACCGAC CGTTTTCATC CCTAATCTAG ACTACTTATC 
    TTTTTCAGAT ATTTGGATTA GACGGTAATC TATACATATG TTTCTTGAAC 
    GCTATCGGTG TGGATAGAGT GTAGCATTTG AATTTT

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 23423058 [Map]; Strand: c
      • AT3G63445.2 - [+] show detail - other RNA
        Distance: 0; Region: exon3 (NonCoding)
      • AT3G63445.3 - [+] show detail - other RNA
        Distance: 0; Region: exon2 (NonCoding)
      • AT3G63445.1 - [+] show detail - other RNA
        Distance: 0; Region: exon4 (NonCoding)
    Flanking Genome Sequence: GT18487 - 5-prime edge 
    ACCGTTTTCA TCCCTACTTT TCTCAACTCC ATTGGTGCGG TGGTGGGCAT 
    TGCATAATGA GGTGTGTGAA CTGAACACAG AGTTGGTGGA AATGGTTGGT 
    CTCT

AT1G65670.1

Model type
Protein coding
Short Description
cytochrome P450, family 702, subfamily A, polypeptide 1
Curator Summary
a member of the cytochrome P450 gene family. molecular function unknown.
Computational Description
"cytochrome P450, family 702, subfamily A, polypeptide 1" (CYP702A1); FUNCTIONS IN: electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding; INVOLVED IN: oxidation reduction; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, E-class, group I (InterPro:IPR002401), Cytochrome P450, conserved site (InterPro:IPR017972); BEST Arabidopsis thaliana protein match is: cytochrome P450, family 702, subfamily A, polypeptide 2 (TAIR:AT4G15300.1); Has 23293 Blast hits to 23240 proteins in 1360 species: Archae - 56; Bacteria - 2869; Metazoa - 9625; Fungi - 3612; Plants - 6281; Viruses - 3; Other Eukaryotes - 847 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G63445.1

Model type
Other RNA
Short Description
other RNA
Curator Summary
Potential natural antisense gene, locus overlaps with AT3G63440
Link
InterPro Scan - TAIR

AT3G63445.2

Model type
Other RNA
Short Description
other RNA
Curator Summary
Potential natural antisense gene, locus overlaps with AT3G63440
Link
InterPro Scan - TAIR

AT3G63445.3

Model type
Other RNA
Short Description
other RNA
Curator Summary
Potential natural antisense gene, locus overlaps with AT3G63440
Link
InterPro Scan - TAIR

AT4G02780.1

Model type
Protein coding
Short Description
Terpenoid cyclases/Protein prenyltransferases superfamily protein
Curator Summary
Catalyzes the conversion of geranylgeranyl pyrophosphate (GGPP) to copalyl pyrophosphate (CPP) of gibberellin biosynthesis
Computational Description
GA REQUIRING 1 (GA1); CONTAINS InterPro DOMAIN/s: Terpene synthase, metal-binding domain (InterPro:IPR005630), Terpenoid synthase (InterPro:IPR008949), Terpenoid cylases/protein prenyltransferase alpha-alpha toroid (InterPro:IPR008930), Terpene synthase-like (InterPro:IPR001906); BEST Arabidopsis thaliana protein match is: Terpenoid cyclases/Protein prenyltransferases superfamily protein (TAIR:AT1G79460.1); Has 1979 Blast hits to 1971 proteins in 256 species: Archae - 0; Bacteria - 97; Metazoa - 0; Fungi - 61; Plants - 1817; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).
Link
InterPro Scan - TAIR