Home
Mutant Lines
GT18535

GT18535

CSHL Arabidopsis genetrap mutant lines

Original: GT18535

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT18535

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

3 prime edge [+] show sequence

Chromosome: 1; Position: 2409862 [Map]; Strand: w
- AT1G07770.1 - [+] show detail - ribosomal protein S15A
  Distance: -285; Region: promoter
- AT1G07770.2 - [+] show detail - ribosomal protein S15A
  Distance: -282; Region: promoter

AACGGTAGAG GTATTTTACC GACCGTTACC GACCGTTTTC ATCCCTAGTG 
ATAATAGGTT TACCCGAGGC TTTTAGATTT TATAGAGAAG GAACAAACGT 
ATTCTATTGG ATAGAAATCT TCACGAGGAT CATTGACGTG TATATTTCTC 
ATTCGTTAAA TTTATCAATG CTCAAATTAG ATCTGACGGC TGAGAGAAAC 
ATCATTCATT TTTACAGGTT CAAGTTATAG CTTTGATAGG CTTCAATGGT 
CGTGACAAAG AAGCCCATTG GGCCTGAAAT GAAGCTTGAG ACGCAGCGCA 
TAACACATGT CAATTGGTTT CTTTGATTTT CCCTAGTATA AAAAGCGATA 
AGAAAATCCT AGCTCACCTT CTCTTCTTCC TCTAATTGCT TTTCTCCGTC 
ACTGAGTACC TTGCCTCTCG AGCTCCCAAT CTTAAGGTAC AATTGATCTT 
CACTATAGTC GTTCAGAATC TGATCTGCTT ATAGAAATAT TCAGAAGTGT 
GAGATAGCTG CTAATTGGTC TTTACTT

5 prime edge [+] show sequence
1. Chromosome: 1; Position: 2413032 [Map]; Strand: w
  - AT1G07780.5 - [+] show detail - phosphoribosylanthranilate isomerase 1
    Distance: -355; Region: promoter
  - AT1G07780.1 - [+] show detail - phosphoribosylanthranilate isomerase 1
    Distance: -355; Region: promoter
  - AT1G07780.2 - [+] show detail - phosphoribosylanthranilate isomerase 1
    Distance: -359; Region: promoter
  - AT1G07780.3 - [+] show detail - phosphoribosylanthranilate isomerase 1
    Distance: -357; Region: promoter
  - AT1G07780.4 - [+] show detail - phosphoribosylanthranilate isomerase 1
    Distance: -357; Region: promoter
  - AT1G07790.1 - [+] show detail - Histone superfamily protein
    Distance: 0; Region: exon1 (5UTR)
Flanking Genome Sequence: GT18535 - 5-prime edge
```
TCCTACTTTC TCCCTGATTA TCACCATTCA CCACTAAACT ACTTCAATCA 
ACTTCCTTTT CCCGAGAAAA TCAGAAAGAA AATTCACGAT GGCACCAAGA 
GCCGAGAAGA AGCCCGCCGA GAAAAAAACC GCCGCTGAGA AACCGGTGGA 
AGAGAACAAG GCTGCTGAAA AGGCTCCGGC GGAGAAGAAA CCCAAGGCGG 
GGAAGAAATT GCCACCAAAG GAAGCCGGTG ACAAGAAGAA GAAGCGATCT 
AAGAAAAACG TCGAAACCTA CAAGATCTAC ATCTTCAAGG TGCTGAAGCA 
GGTTCATCCA GATATCGGAA TTTCAAGCAA AGCCATGGGG ATTATGAACA 
GTTTCATCAA CGACATATTC GAGAAGCTAG CTCAGGAATC TTCGAAACTC 
GCTAGGTACA ACAAGAAGCC G
```

AT1G07770.1

Model type: Protein coding
Short Description: ribosomal protein S15A
Curator Summary: Encodes cytoplasmic ribosomal protein S15a.
Computational Description: ribosomal protein S15A (RPS15A); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: cytosolic small ribosomal subunit, cytosolic ribosome, cell wall, plasma membrane, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein S8 (InterPro:IPR000630); BEST Arabidopsis thaliana protein match is: Ribosomal protein S8 family protein (TAIR:AT5G59850.1); Has 3677 Blast hits to 3677 proteins in 1417 species: Archae - 277; Bacteria - 1997; Metazoa - 434; Fungi - 223; Plants - 257; Viruses - 0; Other Eukaryotes - 489 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT1G07770.2

Model type: Protein coding
Short Description: ribosomal protein S15A
Curator Summary: Encodes cytoplasmic ribosomal protein S15a.
Computational Description: ribosomal protein S15A (RPS15A); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: cytosolic small ribosomal subunit, cytosolic ribosome, cell wall, plasma membrane, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein S8 (InterPro:IPR000630); BEST Arabidopsis thaliana protein match is: Ribosomal protein S8 family protein (TAIR:AT5G59850.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT1G07780.1

Model type: Protein coding
Short Description: phosphoribosylanthranilate isomerase 1
Curator Summary: Encodes phosphoribosylanthranilate isomerase which catalyzes the third step of the tryptophan biosynthetic pathway. Member of gene family.
Computational Description: phosphoribosylanthranilate isomerase 1 (PAI1); CONTAINS InterPro DOMAIN/s: N-(5'phosphoribosyl)anthranilate isomerase (PRAI) (InterPro:IPR001240), Aldolase-type TIM barrel (InterPro:IPR013785), Ribulose-phosphate binding barrel (InterPro:IPR011060); BEST Arabidopsis thaliana protein match is: phosphoribosylanthranilate isomerase 2 (TAIR:AT5G05590.1); Has 5472 Blast hits to 5471 proteins in 2119 species: Archae - 168; Bacteria - 3853; Metazoa - 4; Fungi - 235; Plants - 77; Viruses - 0; Other Eukaryotes - 1135 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT1G07780.2

Model type: Protein coding
Short Description: phosphoribosylanthranilate isomerase 1
Curator Summary: Encodes phosphoribosylanthranilate isomerase which catalyzes the third step of the tryptophan biosynthetic pathway. Member of gene family.
Computational Description: phosphoribosylanthranilate isomerase 1 (PAI1); CONTAINS InterPro DOMAIN/s: N-(5'phosphoribosyl)anthranilate isomerase (PRAI) (InterPro:IPR001240), Aldolase-type TIM barrel (InterPro:IPR013785), Ribulose-phosphate binding barrel (InterPro:IPR011060); BEST Arabidopsis thaliana protein match is: phosphoribosylanthranilate isomerase 2 (TAIR:AT5G05590.1); Has 5472 Blast hits to 5471 proteins in 2119 species: Archae - 168; Bacteria - 3853; Metazoa - 4; Fungi - 235; Plants - 77; Viruses - 0; Other Eukaryotes - 1135 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT1G07780.3

Model type: Protein coding
Short Description: phosphoribosylanthranilate isomerase 1
Curator Summary: Encodes phosphoribosylanthranilate isomerase which catalyzes the third step of the tryptophan biosynthetic pathway. Member of gene family.
Computational Description: phosphoribosylanthranilate isomerase 1 (PAI1); CONTAINS InterPro DOMAIN/s: N-(5'phosphoribosyl)anthranilate isomerase (PRAI) (InterPro:IPR001240), Aldolase-type TIM barrel (InterPro:IPR013785), Ribulose-phosphate binding barrel (InterPro:IPR011060); BEST Arabidopsis thaliana protein match is: phosphoribosylanthranilate isomerase 2 (TAIR:AT5G05590.1); Has 5472 Blast hits to 5471 proteins in 2119 species: Archae - 168; Bacteria - 3853; Metazoa - 4; Fungi - 235; Plants - 77; Viruses - 0; Other Eukaryotes - 1135 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT1G07780.4

Model type: Protein coding
Short Description: phosphoribosylanthranilate isomerase 1
Curator Summary: Encodes phosphoribosylanthranilate isomerase which catalyzes the third step of the tryptophan biosynthetic pathway. Member of gene family.
Computational Description: phosphoribosylanthranilate isomerase 1 (PAI1); CONTAINS InterPro DOMAIN/s: N-(5'phosphoribosyl)anthranilate isomerase (PRAI) (InterPro:IPR001240), Aldolase-type TIM barrel (InterPro:IPR013785), Ribulose-phosphate binding barrel (InterPro:IPR011060); BEST Arabidopsis thaliana protein match is: phosphoribosylanthranilate isomerase 2 (TAIR:AT5G05590.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT1G07780.5

Model type: Protein coding
Short Description: phosphoribosylanthranilate isomerase 1
Curator Summary: Encodes phosphoribosylanthranilate isomerase which catalyzes the third step of the tryptophan biosynthetic pathway. Member of gene family.
Computational Description: phosphoribosylanthranilate isomerase 1 (PAI1); CONTAINS InterPro DOMAIN/s: N-(5'phosphoribosyl)anthranilate isomerase (PRAI) (InterPro:IPR001240), Aldolase-type TIM barrel (InterPro:IPR013785), Ribulose-phosphate binding barrel (InterPro:IPR011060); BEST Arabidopsis thaliana protein match is: phosphoribosylanthranilate isomerase 2 (TAIR:AT5G05590.1).
Link: InterPro Scan - TAIR

AT1G07790.1

Model type: Protein coding
Short Description: Histone superfamily protein
Curator Summary: Encodes a histone 2B (H2B) protein.
Computational Description: HTB1; FUNCTIONS IN: DNA binding; INVOLVED IN: nucleosome assembly; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Histone H2B (InterPro:IPR000558), Histone-fold (InterPro:IPR009072), Histone core (InterPro:IPR007125); BEST Arabidopsis thaliana protein match is: Histone superfamily protein (TAIR:AT3G45980.1); Has 3418 Blast hits to 3391 proteins in 380 species: Archae - 0; Bacteria - 96; Metazoa - 2240; Fungi - 204; Plants - 476; Viruses - 0; Other Eukaryotes - 402 (source: NCBI BLink).
Link: InterPro Scan - TAIR