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GT18548

CSHL Arabidopsis genetrap mutant lines

Original: GT18548

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT18548

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 28317638 [Map]; Strand: c
      • AT1G75450.1 - [+] show detail - cytokinin oxidase 5
        Distance: 0; Region: exon1 (CDS)
      • AT1G75450.2 - [+] show detail - cytokinin oxidase 5
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: GT18548 - 5-prime edge 
    CTTTATCCCT GGTAACCGGG ACGCCAAGCC ACTCGTCCGA CCGGATGAAA 
    TGTATGTGGA TGTATGGGGT GGAGAGTTAT GGGTCGATGT GTTGAAGAAA 
    ACGTTGGAGC ATGGCTTAGC ACCAAAATCA TGGACGGATT ACTTGTATCT 
    AACCGTTGGA GGTACACTCT CCAATGCAGG AATCAGTGGT CAAGCTTTTC 
    ACCATGGTCC TCAAATTAGT AACGTCCTTG AGCTCGACGT TGTAACTGGT 
    TAGTATTAAA ACATTCAAGT TCATATATTT TAAATGCTTT TGTTTGAAGT 
    TTTACTAATA ACAAGAAATT GATACCAAAA AGTAGGGAAA GGAGAGGTGA 
    TGAGATGCTC AGAAGAAGAG AACACAAGGC TATTCCATGG AGTTCTTGGT 
    GGATTAGGTC AATTTGGGAT CATCACTCGA GCACGAATCT CTCTCGAACC 
    TGCTCCCCAA AGGGTAATAT TTTTTTAATG ACTAGCTATC AAAAATCCCT 
    GGCGGGTCCA TACGTTGTAA TCTTTTTAGT TTTTACTGTT GATGGTATTT 
    TTTATATATT TTGATAATAA AACCCTAAAA TGGTATATTG TGATGACAGG 
    TGAGATGGAT ACGGGTATTG TATTCGAGCT TCAAAGTGTT TACGGAGGAC 
    CAAGAGTACT TAATCTCAAT GCATGGTCAA TTAAAGTTTG ATTACGTGGA 
    AGGTTTTGTG ATTGTGGA

AT1G75450.1

Model type
Protein coding
Short Description
cytokinin oxidase 5
Curator Summary
This gene used to be called AtCKX6. It encodes a protein whose sequence is similar to cytokinin oxidase/dehydrogenase, which catalyzes the degradation of cytokinins.
Computational Description
cytokinin oxidase 5 (CKX5); CONTAINS InterPro DOMAIN/s: Cytokinin dehydrogenase 1, FAD/cytokinin binding domain (InterPro:IPR015345), FAD-binding, type 2 (InterPro:IPR016166), Oxygen oxidoreductase covalent FAD-binding site (InterPro:IPR006093), FAD-linked oxidase-like, C-terminal (InterPro:IPR016164), FAD linked oxidase, N-terminal (InterPro:IPR006094); BEST Arabidopsis thaliana protein match is: cytokinin oxidase/dehydrogenase 1 (TAIR:AT2G41510.1); Has 6615 Blast hits to 6610 proteins in 1194 species: Archae - 154; Bacteria - 4290; Metazoa - 145; Fungi - 1218; Plants - 369; Viruses - 0; Other Eukaryotes - 439 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G75450.2

Model type
Protein coding
Short Description
cytokinin oxidase 5
Curator Summary
This gene used to be called AtCKX6. It encodes a protein whose sequence is similar to cytokinin oxidase/dehydrogenase, which catalyzes the degradation of cytokinins.
Computational Description
cytokinin oxidase 5 (CKX5); CONTAINS InterPro DOMAIN/s: Cytokinin dehydrogenase 1, FAD/cytokinin binding domain (InterPro:IPR015345), FAD-binding, type 2 (InterPro:IPR016166), Oxygen oxidoreductase covalent FAD-binding site (InterPro:IPR006093), FAD-linked oxidase-like, C-terminal (InterPro:IPR016164), FAD linked oxidase, N-terminal (InterPro:IPR006094); BEST Arabidopsis thaliana protein match is: cytokinin oxidase/dehydrogenase 1 (TAIR:AT2G41510.1).
Link
InterPro Scan - TAIR