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GT18553

CSHL Arabidopsis genetrap mutant lines

Original: GT18553

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT18553

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 186280 [Map]; Strand: w
      • AT4G00430.1 - [+] show detail - plasma membrane intrinsic protein 1;4
        Distance: 0; Region: intron3 (CDS)
      • AT4G00430.2 - [+] show detail - plasma membrane intrinsic protein 1;4
        Distance: 0; Region: intron2 (3UTR)
    Flanking Genome Sequence: GT18553 - 3-prime edge 
    GTGAGTAAAC AACTCTAATG AAGAGGACAA CTCACAACGT ATTATGATGT 
    TTTCTAATAT ATCTGAATTT GTCAAATTGC GGTGGTTGTT GCAATGTGAT 
    TTTCTGGGTT GCACCATTCA TTGTAGCAGC TCTAGCAGCA CTATACTCAC 
    CACATTGTCA TAGGATCGAT TCCTCTCCAG AGCCAGACTT CGACACACAC 
    ACAAAGATTC CACGGGCCAG AATTCGTTCT TTACTAGTTA CTTTGCTTAT 
    CTATCTAATG TAGCTAGTGC ATTGCAATGT CACTGAGCCT TTCGAGAGTA 
    TGTCTTTGGG ATTTCTAATC CGCTTTTGTC TATGTAAAAA CCATGGTTTA 
    TCTTTCAAAG TTGTCTGAGG TTGGCCTCTT C

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 186535 [Map]; Strand: w
      • AT4G00430.1 - [+] show detail - plasma membrane intrinsic protein 1;4
        Distance: 0; Region: intron2 (CDS)
      • AT4G00430.2 - [+] show detail - plasma membrane intrinsic protein 1;4
        Distance: 0; Region: exon2 (3UTR)
    Flanking Genome Sequence: GT18553 - 5-prime edge 
    CCTACTTTCT CCCTGATAGA GAGTGACCAA TTATTAGTCA TAAACTGTTA 
    AACCAATAAA ACCGGGGAAA TTCGATCGGT TAGTAGTCTA ATTAAAGCAA 
    TAAAATCAGC AAACCGGAAC TAAGAGAGGG GTCCATACCG GGACGTGTGA 
    GTCACGGGCG CTTCTCTTGG CGTCGGTGGC GGAGAAGACA GTGTAGACGA 
    GAACGAATGT TCCGATGATT TCAGCACCAA GGCCAGAACC TTTGGTGTAG 
    CCATGAGCAA CGGTGTTAGC ACCACCACCG AGAGTCTGGT ACGGCGTTGG 
    CTGGAAACCT TTGACGACTC CGGCACCACA GATGGCTCCA AGACATTGCA 
    TAATCATGTA GAACACTGCT CTGGTCAGAG ATAACTTCCG AGCCAAGAAC 
    AGACCGAATG TTACAGCAGG GTTGATGTGT CCACCTAAAA ACACACAAAC 
    ACAAACACAT GTTACAGAAA GATGTGAGCT TTTATCTGAG AAATCAACAG 
    TAAAATTGGT GTAACATACA GATCTAGATA AGCCCAAGCA TCAAAAGAAC 
    CCAAAGTTTC CTGCTTTATA ACTGTTTTTT GGTTCCTTTA CATTTTCTAG 
    GTCAAACAGA GCATGAACAA AAACAGAGGA CTCACATAAT GGTTTTCAGA 
    AACAAAACAG AGCAAATAAA GCAGAACCAA AACAGAGAAC CCACCAAAAC 
    AGAGATTACA GAAAAATGGG AAAATCGAGA GAAGGTTACT TGAAATTCCA 
    GCAGTACAGT AGACAAGAGC AAAGATCATG CCACCAAAAG CCAAGCGATA 
    CCTTGGATTC CA

AT4G00430.1

Model type
Protein coding
Short Description
plasma membrane intrinsic protein 1;4
Curator Summary
a member of the plasma membrane intrinsic protein subfamily PIP1.
Computational Description
plasma membrane intrinsic protein 1;4 (PIP1;4); FUNCTIONS IN: water channel activity; INVOLVED IN: response to water deprivation, transport; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Major intrinsic protein, conserved site (InterPro:IPR022357), Aquaporin (InterPro:IPR012269), Major intrinsic protein (InterPro:IPR000425); BEST Arabidopsis thaliana protein match is: plasma membrane intrinsic protein 1B (TAIR:AT2G45960.1); Has 10702 Blast hits to 10683 proteins in 2216 species: Archae - 88; Bacteria - 5147; Metazoa - 1472; Fungi - 442; Plants - 2512; Viruses - 2; Other Eukaryotes - 1039 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G00430.2

Model type
Protein coding
Short Description
plasma membrane intrinsic protein 1;4
Curator Summary
a member of the plasma membrane intrinsic protein subfamily PIP1.
Computational Description
TRANSMEMBRANE PROTEIN C (TMP-C); FUNCTIONS IN: water channel activity; INVOLVED IN: response to water deprivation, transport; LOCATED IN: membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Major intrinsic protein, conserved site (InterPro:IPR022357), Major intrinsic protein (InterPro:IPR000425); BEST Arabidopsis thaliana protein match is: plasma membrane intrinsic protein 1B (TAIR:AT2G45960.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR