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GT18559

CSHL Arabidopsis genetrap mutant lines

Original: GT18559

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT18559

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 26598000 [Map]; Strand: w
      • AT1G70550.2 - [+] show detail - Protein of Unknown Function (DUF239)
        Distance: 0; Region: intron2 (CDS)
      • AT1G70550.1 - [+] show detail - Protein of Unknown Function (DUF239)
        Distance: 0; Region: intron1 (CDS)
    Flanking Genome Sequence: GT18559 - 5-prime edge 
    TTACTTTGTT ACTCTGTTTC GACTCTGTTT TTGCTCTGTT TTTACTCTGT 
    TTTGTTAATT AACTGACATG CAAGTTTTGT TACTCTGTTC TTACTCTGTT 
    TTTTGCTCTG TTTCTTTTCC ATGTGTTATG TTTGCAGAGC TCAGATGGAG 
    ATAAAATAGA TTGTGTTTCA ACTCATCAGC AACCAGCTTT CGATCATCCT 
    CTCTTACAAG GACAAAAACC ATTGGTAAAT ATTATTTTCC CTCCTCTTCT 
    CCATTTTATC TCTTTTCATT AGTATTCATC TCACTCGA

AT1G70550.1

Model type
Protein coding
Short Description
Protein of Unknown Function (DUF239)
Computational Description
Protein of Unknown Function (DUF239); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF239, plant (InterPro:IPR004314); BEST Arabidopsis thaliana protein match is: Protein of Unknown Function (DUF239) (TAIR:AT1G23340.2); Has 775 Blast hits to 727 proteins in 29 species: Archae - 0; Bacteria - 13; Metazoa - 0; Fungi - 10; Plants - 752; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G70550.2

Model type
Protein coding
Short Description
Protein of Unknown Function (DUF239)
Computational Description
Protein of Unknown Function (DUF239); INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF239, plant (InterPro:IPR004314); BEST Arabidopsis thaliana protein match is: Protein of Unknown Function (DUF239) (TAIR:AT1G23340.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR