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GT18564

CSHL Arabidopsis genetrap mutant lines

Original: GT18564

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT18564

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 3070448 [Map]; Strand: c
      • AT1G09510.1 - [+] show detail - NAD(P)-binding Rossmann-fold superfamily protein
        Distance: 0; Region: exon4 (CDS)
    Flanking Genome Sequence: GT18564 - 3-prime edge 
    TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCCC TAGGGATGTT 
    GCCCTCGCTC ATATCAAAGC GTTCGAGACT CCTTCAGCCA ACGGTAGATA 
    TATTATTGAG GGTCCGGTTG TGACGATAAA TGACATTGAG AAGATTTTGC 
    GTGAATTCTT TCCTGACTTG AATCTCAGTA ACAAGTAAGT TCAACATTCC 
    TTCACATTTG ATTTACAACC ACATCTACTC TGAAATACTT CATACAAAAT 
    AAAAACTTTC CTGAGTCAGC TTCTAAGGCG TGAAGCAAGT CAGATCATTC 
    CAGTGATATA CAAGCTATGT GTTGAGAACG CGAACAGTTT GTGAATTGAG 
    TTCACTCCCA CAGAAACAAC CCTTAGAGAC ACTATTCTTA GCCTCAGAGA 
    GAAATGTCTT GAGTGACCAT CCTATCTTGT TATTGCT

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 3070360 [Map]; Strand: c
      • AT1G09510.1 - [+] show detail - NAD(P)-binding Rossmann-fold superfamily protein
        Distance: 0; Region: exon4 (CDS)
    Flanking Genome Sequence: GT18564 - 5-prime edge 
    CGACGAGCCT AAAATCCTTG TTGATGAAAT TGTCCTTACC TGTAATAAGT 
    TCCACAATCA CATTTACTGA GAAAGTAAGG CTTGGTTTCA AGAGCGGTCC 
    GAGCACAAGT CCTGGATTTA TTACGACCAA GTCGAGCCCT TTTTCCTTTG 
    CGAATCGCCA TGCTTCATCT CACTCGA

AT1G09510.1

Model type
Protein coding
Short Description
NAD(P)-binding Rossmann-fold superfamily protein
Curator Summary
similar to Eucalyptus gunnii alcohol dehydrogenase of unknown physiological function (GI:1143445), Vigna unguiculata (gi:1854445), NOT a cinnamyl-alcohol dehydrogenase
Computational Description
NAD(P)-binding Rossmann-fold superfamily protein; FUNCTIONS IN: alcohol dehydrogenase (NAD) activity, cinnamyl-alcohol dehydrogenase activity; INVOLVED IN: lignin biosynthetic process, cellular metabolic process, metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: LP.04 four leaves visible, 4 anthesis, C globular stage, F mature embryo stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: NAD-dependent epimerase/dehydratase (InterPro:IPR001509), NAD(P)-binding domain (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: NAD(P)-binding Rossmann-fold superfamily protein (TAIR:AT1G09500.1); Has 11399 Blast hits to 11383 proteins in 1876 species: Archae - 216; Bacteria - 4771; Metazoa - 368; Fungi - 952; Plants - 2526; Viruses - 56; Other Eukaryotes - 2510 (source: NCBI BLink).
Link
InterPro Scan - TAIR