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GT18582

CSHL Arabidopsis genetrap mutant lines

Original: GT18582

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT18582

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 2510948 [Map]; Strand: w
      • AT4G04930.1 - [+] show detail - fatty acid desaturase family protein
        Distance: 0; Region: exon2 (3UTR)
    Flanking Genome Sequence: GT18582 - 5-prime edge
    GCTTATAGCA GATGAAGAGG AAGCTCTCAA AGTCTGACTA ATTTTTCTTT 
    GTTTCTTACA TCAAACTCTT CTTTTATTCT ATTTTAGTAT TTTTGTTTTG
    AGGGTTGATT TTTTCAACTT TATTGGAGGA CAAATCTGTG ATCTTAGGTT
    GCAGATTTTA TGATTTCTCA CGGAATTTAA ACCCTATCCT CCAATTCAGG
    ATAACGTTGA CATGTTCCAT TTGATACATG TTAATGCTAA AAGACCGGGC
    AATATTATTA AGCTTCTTCA AAATTGCTAT TT

AT4G04930.1

Model type
Protein coding
Short Description
fatty acid desaturase family protein
Curator Summary
Encodes a sphingolipid delta4-desaturase, involved in sphingolipid biosynthesis. Specifically expressed in floral tissues. Knockout mutants were devoid of sphinga-4,8-dienine in floral tissues.
Computational Description
DES-1-LIKE; FUNCTIONS IN: oxidoreductase activity, sphingolipid delta-4 desaturase activity; INVOLVED IN: sphingolipid biosynthetic process; LOCATED IN: integral to membrane; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Sphingolipid delta4-desaturase, N-terminal (InterPro:IPR013866), Fatty acid desaturase, type 1 (InterPro:IPR005804), Sphingolipid delta4-desaturase (InterPro:IPR011388); Has 703 Blast hits to 697 proteins in 257 species: Archae - 0; Bacteria - 174; Metazoa - 227; Fungi - 120; Plants - 36; Viruses - 3; Other Eukaryotes - 143 (source: NCBI BLink).
Link
InterPro Scan - TAIR