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GT18589

CSHL Arabidopsis genetrap mutant lines

Original: GT18589

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT18589

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 33174 [Map]; Strand: w
      • AT4G00080.1 - [+] show detail - Plant invertase/pectin methylesterase inhibitor superfamily protein
        Distance: 0; Region: exon1 (CDS)
      • AT4G00085.1 - [+] show detail - pre-tRNA
        Distance: -626; Region: promoter
      • AT4G00090.1 - [+] show detail - Transducin/WD40 repeat-like superfamily protein
        Distance: -917; Region: promoter
    Flanking Genome Sequence: GT18589 - 3-prime edge 
    AAGTTCTTAA CCTCTTTTAA CAAGAACGCC TTTGTGTACT TAGCTCTATA 
    TAGGCTGGCT TTGAGCGCAA ATCGGGCCAG ATCCCGTGGA TTTTGCACCG 
    CGCGTGAACG CACGTAACGA GACATCGACC GGACGCATAG TTTCGGGTAT 
    AAGGTTGTTC GGCACCATGA GTGCACGTAA GCCTTCGTGT CGTAGTCTTT 
    TGATGACGTG GCGGTTGCCG AGAAGATGAT GAGAGGGAAC AGGGAGAGTA 
    ATACAAAGAA CAATTTGTTG TTAGCCGCCA TGGCGAATTA GAGAATTAAC 
    TGAGAGGATA TGTAGCTTAA TCGGTGGATG GTATAATATT TACATGTCTT 
    TGTGTGTGTC CCTTATATAT ACTGTATGCA TCATTTTGCA TGGCACGTGA 
    ATAAGAATGA GCTGGATTTA AGATCACTTG ACTAGGATTT G

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 33338 [Map]; Strand: w
      • AT4G00080.1 - [+] show detail - Plant invertase/pectin methylesterase inhibitor superfamily protein
        Distance: 0; Region: exon1 (CDS)
      • AT4G00085.1 - [+] show detail - pre-tRNA
        Distance: -462; Region: promoter
      • AT4G00090.1 - [+] show detail - Transducin/WD40 repeat-like superfamily protein
        Distance: -753; Region: promoter
    Flanking Genome Sequence: GT18589 - 5-prime edge 
    GACTGCTTGG ACCAATAAGA AGACAGCGTG AACCAGTTGA GTCTAGCCAT 
    AGCGGAGCTA GACAGAGTCA GCAGGAGACA GGGAAAGAGC CAAGGGGATC 
    TACACTGGCA TATAAATAAC CTGCAGACGT GGACAAGCAC AGCTCTTACA 
    GACGCCGAGA CTTGCGTGAG CCAGTTCCCG GGACGTAGGA TGAGCAAACT 
    TAAGGCTACG ATTAAAGGAA AAGTGAAGAA TGTGGAGGAA ACAACTAGTA 
    ATGCCCTTGC

AT4G00080.1

Model type
Protein coding
Short Description
Plant invertase/pectin methylesterase inhibitor superfamily protein
Computational Description
unfertilized embryo sac 11 (UNE11); FUNCTIONS IN: enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity; INVOLVED IN: double fertilization forming a zygote and endosperm; LOCATED IN: endomembrane system; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Pectinesterase inhibitor (InterPro:IPR006501); BEST Arabidopsis thaliana protein match is: Plant invertase/pectin methylesterase inhibitor superfamily protein (TAIR:AT1G62770.1); Has 574 Blast hits to 571 proteins in 37 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 574; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G00085.1

Model type
Pre-tRNA
Short Description
pre-tRNA
Computational Description
tRNA-Lys (anticodon: CTT)
Link
InterPro Scan - TAIR

AT4G00090.1

Model type
Protein coding
Short Description
Transducin/WD40 repeat-like superfamily protein
Computational Description
Transducin/WD40 repeat-like superfamily protein; FUNCTIONS IN: nucleotide binding; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40 repeat, conserved site (InterPro:IPR019775), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: periodic tryptophan protein 2 (TAIR:AT1G15440.2); Has 19942 Blast hits to 11235 proteins in 520 species: Archae - 42; Bacteria - 5638; Metazoa - 5982; Fungi - 4099; Plants - 1742; Viruses - 0; Other Eukaryotes - 2439 (source: NCBI BLink).
Link
InterPro Scan - TAIR