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GT18592

CSHL Arabidopsis genetrap mutant lines

Original: GT18592

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT18592

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 30224001 [Map]; Strand: c
      • AT1G80390.1 - [+] show detail - indole-3-acetic acid inducible 15
        Distance: -1299; Region: intergenic
      • AT1G80400.1 - [+] show detail - RING/U-box superfamily protein
        Distance: -1175; Region: intergenic
    Flanking Genome Sequence: GT18592 - 3-prime edge 
    CGGTAGAGGT ATTTTACCGA CCGTTACCGA CCGTTTTCAT CCCTAAATGA 
    GATGTCAAAA AAGTTTAGAC AAAGGAAAAG AGCAGAACAT TAATTACAGC 
    AGCGTAGGGT CACATGCGTA AGTCACGTGA CTCTGTTTTT CGTTGGGGAA 
    CATAGAATCA TAAATGATTT TTTCGATGGT TCACGACACT ATTCTTAGAC 
    CAATAAGGGC AATAAGAGTT AAACCAGGGG CTAATAGGTC CTACTGGCGA 
    CACATAGACG AATTTACCGG TTTCGATTAC AAACCCGTGA CCGGTAATTC 
    CGGTCAGCCA TTGTTTTCTA AGTTTGTTTT CTTTCGTTAT AATGCGCATG 
    GAATGAAACA GTCGT

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 17927288 [Map]; Strand: w
      • AT4G38225.1 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biolo...
        Distance: 0; Region: exon1 (CDS)
      • AT4G38225.3 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biolo...
        Distance: 0; Region: exon1 (CDS)
      • AT4G38225.2 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biolo...
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: GT18592 - 5-prime edge 
    CTTTCTCCCT GCAATGATAT CGTCCTCCGG AAGCTCCCTC TTATGGCGGA 
    GCCGTACACA TGTGCCTGCA CCGCCGCCTC GGTCTTCGCC ACCGCTTAAA 
    GCTCTCTCCT TTCCCTTCTC TTCCAGTTTA TGGTTTATTC ACAGAACCAC 
    AATTTCCCCT CTTTCGTGTT CAGCTGAAAG TTCCTCGGAG ATTGCCCTGG 
    CGCAGAGCCA GCCTGCCCCT GATTTCAATC GTAAGTCCTC CATTGCTGCC 
    TTTAAGATTA TATAAATGAT GCTTTCCGGT GAATTAAGGC ATCTATTTTT 
    TTTTTAAACC CCCTCCCCGG TTGGGGTGGG GAAAGGGGTT CAACAACCCG 
    GGCCGAATTT CCTTAAAAAG GGGTTGGGGA AAGGGAACGT TTTCGAACAA 
    AATTTTACTG GCAAGGGGAA CCCGTTAAAA TACCTGGAAT CAGGGGTCCC 
    AAAACCTTTT AAAAAAGGGA AAGGAAAGGG GTTCAATGGG AAAACCAAGG 
    GCCCCATTTT GGCCAAGCCA AATTAATTAT CTTTTTTTTA AAAGTCCTTA 
    AAATTCCTCC CAACCTTTGA AGGGAAACTT AAGGCACCCC CCCTTTACAC 
    CTTCAACCAA AGAATCTTCG GGGAAGGAAA ACC

AT1G80390.1

Model type
Protein coding
Short Description
indole-3-acetic acid inducible 15
Curator Summary
Member of a multigene family of Auxin responsive genes.
Computational Description
indole-3-acetic acid inducible 15 (IAA15); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: response to auxin stimulus, regulation of transcription; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Aux/IAA-ARF-dimerisation (InterPro:IPR011525), AUX/IAA protein (InterPro:IPR003311); BEST Arabidopsis thaliana protein match is: indole-3-acetic acid inducible 14 (TAIR:AT4G14550.1); Has 1649 Blast hits to 1649 proteins in 74 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1649; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G80400.1

Model type
Protein coding
Short Description
RING/U-box superfamily protein
Computational Description
RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT4G26580.2); Has 10084 Blast hits to 10056 proteins in 295 species: Archae - 0; Bacteria - 8; Metazoa - 2540; Fungi - 826; Plants - 5176; Viruses - 44; Other Eukaryotes - 1490 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G38225.1

Model type
Protein coding
Computational Description
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G38225.2

Model type
Protein coding
Computational Description
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G38225.3

Model type
Protein coding
Computational Description
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR