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GT18610

CSHL Arabidopsis genetrap mutant lines

Original: GT18610

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT18610

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 13400279 [Map]; Strand: w
      • AT4G26542.1 - [+] show detail
        Distance: 2441; Region: intergenic
      • AT4G26550.1 - [+] show detail - Got1/Sft2-like vescicle transport protein family
        Distance: 2236; Region: intergenic
    Flanking Genome Sequence: GT18610 - 3-prime edge 
    ACGTTACCGA CCGTTTTCAT CCCTATACAC ACATTCTACC CGACCGGAGC 
    GGATCGGTAT ACTCATCTCA TCTCGCACCA TTTTGTTCTC TTTACTTCCT 
    TCTTGTTTGT TGGTTTTTGT TCTTTTCTTA TTTTTTTTCC CTACCATAAA 
    TGGACCATTA CCATTCATCT CACTCGA

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 10774699 [Map]; Strand: w
      • AT5G28715.1 - [+] show detail - transposable element gene
        Distance: 4222; Region: intergenic
      • AT5G28720.1 - [+] show detail - unknown protein; Has 4 Blast hits to 4 proteins in 2 species: Archae - 0; Bac...
        Distance: -1432; Region: intergenic
    Flanking Genome Sequence: GT18610 - 5-prime edge 
    TAACCGATCG GTTTATTCGG TTTGAAGGGG AACACATATA AAGGCCAAAA 
    AAGCCGTGGT CGAAGGTCTT TTTTCCCCGT CAAAAAAAAA AAAGGG

AT4G26542.1

Model type
Other RNA
Curator Summary
Potential natural antisense gene, locus overlaps with AT4G26540
Link
InterPro Scan - TAIR

AT4G26550.1

Model type
Protein coding
Short Description
Got1/Sft2-like vescicle transport protein family
Computational Description
Got1/Sft2-like vescicle transport protein family; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: vesicle-mediated transport; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Vesicle transport protein, Got1/SFT2-like (InterPro:IPR007305), Vesicle transport protein, SFT2-like (InterPro:IPR011691); BEST Arabidopsis thaliana protein match is: Got1/Sft2-like vescicle transport protein family (TAIR:AT5G56020.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G28715.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
gypsy-like retrotransposon family, has a 0. P-value blast match to GB:AAD27547 polyprotein (Gypsy_Ty3-element) (Oryza sativa subsp. indica)
Link
InterPro Scan - TAIR

AT5G28720.1

Model type
Protein coding
Computational Description
unknown protein; Has 4 Blast hits to 4 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 4; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR