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GT18612

CSHL Arabidopsis genetrap mutant lines

Original: GT18612

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT18612

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 23059803 [Map]; Strand: w
      • AT5G56980.1 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biolo...
        Distance: -2061; Region: intergenic
      • AT5G56990.1 - [+] show detail - BEST Arabidopsis thaliana protein match is: Cystatin/monellin superfamily pro...
        Distance: 1069; Region: intergenic
    Flanking Genome Sequence: GT18612 - 3-prime edge 
    AGGTATTTTA CCGACCGTTA CCGACCGTTT TCATCCCTAC CGACCACAAT 
    TGACACAAAT CGAATCAATT CACCTAAAAA CGAAATGACT TTTCGCCTAA 
    TTCAAAAACA CTCTTCTCAA ATTCTATATA GAACTCCGAC TGAACCGAAA 
    AAGTTATAAA TCCAGCTCTA CATATTACAT ATATAACCCA TTCTCGCACA 
    AGAGATAACT CAAGCTGGAC CATGCATCCT CATAAGGTCA TAATGCATAA 
    AAGAAAAAGT CACAGTCTAT GAAAATGAAA ATTTCTGAAT GAATCACATA 
    AAGTCCATAT ATTTTGTTCG TTATCCGTCG TTATAGTAAA TGCTGCTATG 
    GCGACCCACG TGGGTGTAGG TGTAGCCACT AGCCAGTTAC ATGCAAGTAT 
    GCAAATGCAA TAACTTTTAA TAATAATAAT AATAATAAAA AATGAGAGAC 
    GTGTAGCTAC GAGTGGACCA ATTTTTATAG TAATATATTT TCAAACTATG 
    TGTTTAAGAA ATCAAAGTCA ACCGTAAAAG GTCGGTGTAG CAGCTAGCAC 
    CCCCACGCGA TGTCGTCGAC TCCACATTTT GAGTAAATGT TCTCTTCTGT 
    AATATTTTAA TTTCAAAGTA GAAAAATCAA ATTTAGAAGT CAGTTTTTAG 
    TCATTGTATT TTTAATTTTA GTCATTGTAT TTTAACTTAA GTTACCTCT

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 10774683 [Map]; Strand: w
      • AT5G28715.1 - [+] show detail - transposable element gene
        Distance: 4206; Region: intergenic
      • AT5G28720.1 - [+] show detail - unknown protein; Has 4 Blast hits to 4 proteins in 2 species: Archae - 0; Bac...
        Distance: -1448; Region: intergenic
    Flanking Genome Sequence: GT18612 - 5-prime edge 
    ACGGTTCGGC AGACACTAAC CGATCGGTTT ATTCGGGTTA AAGGGGAACA 
    CATATAAAAG CCAAAA

AT5G28715.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
gypsy-like retrotransposon family, has a 0. P-value blast match to GB:AAD27547 polyprotein (Gypsy_Ty3-element) (Oryza sativa subsp. indica)
Link
InterPro Scan - TAIR

AT5G28720.1

Model type
Protein coding
Computational Description
unknown protein; Has 4 Blast hits to 4 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 4; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G56980.1

Model type
Protein coding
Computational Description
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G26130.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G56990.1

Model type
Protein coding
Computational Description
BEST Arabidopsis thaliana protein match is: Cystatin/monellin superfamily protein (TAIR:AT5G56920.1); Has 38 Blast hits to 38 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 38; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR