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GT18614

CSHL Arabidopsis genetrap mutant lines

Original: GT18614

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT18614

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 14050939 [Map]; Strand: w
      • AT2G33150.1 - [+] show detail - peroxisomal 3-ketoacyl-CoA thiolase 3
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: GT18614 - 5-prime edge
    AGAGTGTGTG GTGATAGAAT GCTTACAGAT AGAGAAGCCT CGTAATTGTG 
    CGAAGAAGAA GAAGAAGGTC GGAGATGCTC AAGAAGAACG CGTTGTCTCT
    CGATCGCTTT CTCCATTTTT TCCGGCTGAT TAAAGATAAA ATTCGGATCT
    GTTGTTTTTT CTCAGAGAAG GATTTGTTCT ACACGAAAAC TCACAGTCCT
    CGGGTTTGTG ATCATTTATA AGGTAAGATG ACTCACCGCT TTGCCCGTTC
    CGGGTAAATG ATAATCCCAA AATAAGTAAG AATAAAAAAT ATCTCTTTTC
    GTAATATTTC TTCTCTTACC ACAACAAAAA ATATCATCTG GGACCGCGAT
    ACAAGTTCTT TTTCTATAAT TGTAAAACCC AAATCAAACA GTTTTTACCC
    TAATGACCTT TCTCTAATTA TAAAATAAAA TGTTCACACT GGTTTGGTGA
    TTGTTAATAG TGGGAAATAA TTGATGATGA GAGTCATAGT CAT

AT2G33150.1

Model type
Protein coding
Short Description
peroxisomal 3-ketoacyl-CoA thiolase 3
Curator Summary
Encodes an organellar (peroxisome, glyoxysome) 3-ketoacyl-CoA thiolase, involved in fatty acid b-oxidation during germination and subsequent seedling growth. Mutants have defects in glyoxysomal fatty acid beta-oxidation. EC2.3.1.16 thiolase.
Computational Description
peroxisomal 3-ketoacyl-CoA thiolase 3 (PKT3); FUNCTIONS IN: acetyl-CoA C-acyltransferase activity; INVOLVED IN: fatty acid beta-oxidation, jasmonic acid biosynthetic process, response to wounding, fatty acid oxidation, glyoxysome organization; LOCATED IN: in 6 components; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Thiolase (InterPro:IPR002155), Thiolase, active site (InterPro:IPR020610), Thiolase, N-terminal (InterPro:IPR020616), Thiolase, conserved site (InterPro:IPR020613), Thiolase, C-terminal (InterPro:IPR020617), Thiolase-like, subgroup (InterPro:IPR016038), Thiolase-like (InterPro:IPR016039), Thiolase, acyl-enzyme intermediate active site (InterPro:IPR020615); BEST Arabidopsis thaliana protein match is: peroxisomal 3-ketoacyl-CoA thiolase 4 (TAIR:AT1G04710.1); Has 22382 Blast hits to 22371 proteins in 2261 species: Archae - 414; Bacteria - 14116; Metazoa - 985; Fungi - 655; Plants - 282; Viruses - 0; Other Eukaryotes - 5930 (source: NCBI BLink).
Link
InterPro Scan - TAIR