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GT18628

CSHL Arabidopsis genetrap mutant lines

Original: GT18628

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT18628

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 21068329 [Map]; Strand: w
      • AT5G51820.1 - [+] show detail - phosphoglucomutase
        Distance: -272; Region: promoter
    Flanking Genome Sequence: GT18628 - 3-prime edge 
    TATCAAAACT GTTACTACGT TCCCACTCAA TTTCACTGAT AAAATGAGTA 
    TATGTATATA TAGAAGTAGT TTAAAATCAC ATTTATTTTG CGGAAGATCA 
    TGCCATTCCA CGAGCTACCA AAATTATCAG ATCTTTTGTT CTTATTGGAG 
    TTTAACGCAT TAGACATTTA ATTTGCAGAA GACCATATGG CCATGCTACA 
    AGTACCAACG TTTTTATTCG ACAGACCAAA GAATATACTA ATCGAATCAG 
    TGACGTGTAA TAAACCGAGG AGGAGGAAAA AGAAAGTGTA AAGATAAGCG 
    AAGCAAGTAC ATGTGGCAGT CCTAGGCTTC CGAGCAACTC AATATCTCTT 
    CCCCAGATCC TCCTCTCTCT TCTTCACTCT TTTAACGGAC ACTTTTCACT 
    GATCTATTCA CTCACTCAAA TCGCCGCCGG AGCTAAATCA ATCAACAATG 
    ACGTCGACCT ACACGAGATT CGATACCGTA TTTCTCTTTT CTAGGTTCGC 
    CGGCGCTAAG TATTCGCCGT TATTGCCGTC TCCGTCGTTT ACTTTATCTA 
    CTTCC

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 28601146 [Map]; Strand: c
      • AT1G76230.1 - [+] show detail - unknown protein; Has 26 Blast hits to 18 proteins in 3 species: Archae - 0; B...
        Distance: -704; Region: promoter
    Flanking Genome Sequence: GT18628 - 5-prime edge 
    CCTACTTTCT CCCTGTTCAA GTCACATATA TCTATTCTAT TGAGGAATTC 
    AATTTTACTT CGTGCCCAAA ATGCCAAATA GAAAACGGTG TAGCTAATTA 
    TCAGAGAGAA AATAACAAAA TACACCGCAT TTAAATCATG TCTTACAAAA 
    CTTTTCCTTT TTTAATTGGG GTTTTAATTT ATTTTCAGTT AATTGGAATC 
    TAAACTAGAC ATGTTAGGTT ATGTTTAGCA ATTATTTCTG GTTGATTAAT 
    CATATAAAAT GATTCTCAGG TCTATTGAAA GTGTTAACAA TTGATGGCTA 
    ACAAATTTAC ACACAGTTTT AAAACTTTGT GGGGTTAGAC GAAGCCAAAC 
    TTAAATTTTT GAGTAGTGTT CTAAAAAAGT TGTAACTTTT GTGTGGTACG 
    AATTTTGAAT ATAAAACTTC GTGGGGCCTT TATATCAAAG TCCTTTTTTA 
    GTGCACAAGT ATATACATGA TTAAAA

AT1G76230.1

Model type
Protein coding
Computational Description
unknown protein; Has 26 Blast hits to 18 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 24; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G51820.1

Model type
Protein coding
Short Description
phosphoglucomutase
Curator Summary
Encodes a plastid isoform of the enzyme phosphoglucomutase involved in controlling photosynthetic carbon flow. Effective petiole movement against the direction of the gravity requires functional PGM activity that is required for full development of amyloplasts.
Computational Description
phosphoglucomutase (PGM); FUNCTIONS IN: phosphoglucomutase activity; INVOLVED IN: response to cold, starch biosynthetic process, detection of gravity, carbohydrate metabolic process; LOCATED IN: apoplast, stromule, chloroplast stroma, chloroplast, chloroplast envelope; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Alpha-D-phosphohexomutase, C-terminal (InterPro:IPR005843), Alpha-D-phosphohexomutase, conserved site (InterPro:IPR016066), Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III (InterPro:IPR016055), Alpha-D-phosphohexomutase, alpha/beta/alpha domain III (InterPro:IPR005846), Alpha-D-phosphohexomutase, alpha/beta/alpha domain II (InterPro:IPR005845), Alpha-D-phosphohexomutase (InterPro:IPR005841), Alpha-D-phosphohexomutase, alpha/beta/alpha domain I (InterPro:IPR005844); BEST Arabidopsis thaliana protein match is: Phosphoglucomutase/phosphomannomutase family protein (TAIR:AT1G70730.3); Has 12307 Blast hits to 12296 proteins in 2800 species: Archae - 231; Bacteria - 9586; Metazoa - 483; Fungi - 211; Plants - 168; Viruses - 0; Other Eukaryotes - 1628 (source: NCBI BLink).
Link
InterPro Scan - TAIR