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GT18700

CSHL Arabidopsis genetrap mutant lines

Original: GT18700

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT18700

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    Not mapped

    Flanking Genome Sequence: GT18700 - 3-prime edge 
    CGTTTGTTTT CGTTACCGGT ATATCCCGTT TTCGTTTCCG TCCCGCAAGT 
    TAAATATGAA AATGAAAACG GTAGAGGTAT TTTACCGACC GTTACCGACC 
    GTTTTCATCC CTGTACACAC ATTCTACCCG ACCGGATCGT ATCGGTATAT 
    TCTNCTCGCT CGACTACCGT TTGTTTTCGT TACCGGTATA TCCCGTTTTC 
    GTTTCCGTCC CGCAAGTTAA ATATGAAAAT GAAAACGGTA GAGGTATTTT 
    ACCGACCGTT ACCGACCGTT TTCATCCCTG TACACACATT CTACCCGACC 
    GGATCGTATC GGTATATTC

  • 3 prime edge [+] show sequence

    Not mapped

    Flanking Genome Sequence: GT18700 - 3-prime edge 
    CGTTTGTTTT CGTTACCGGT ATATCCCGTT TTCGTTTCCG TCCCGCAAGT 
    TAAATATGAA AATGAAAACG GTAGAGGTAT TTTACCGACC GTTACCGACC 
    GTTTTCATCC CTGTACACAC ATTCTACCCG ACCGGATCGT ATCGGTATAT 
    TCATCTCGCT CGACTACCGN TNGTTTTCGT TACCGGTATA TCCCGTTTTC 
    GTTTCCGTCC CGCAAGTTAA ATATGAAAAT GAAAACGGTA GAGGTATTTT 
    ACCGACCGTT ACCGACCGTT TTCGTCCCTG TACACACATT CTACCCGACC 
    GGATCGTATC GGTATATT

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 15405017 [Map]; Strand: w
      • AT5G38470.1 - [+] show detail - Rad23 UV excision repair protein family
        Distance: 0; Region: intron1 (CDS)
      • AT5G38470.2 - [+] show detail - Rad23 UV excision repair protein family
        Distance: 0; Region: intron1 (CDS)
    Flanking Genome Sequence: GT18700 - 5-prime edge 
    ACTCTTGTTT CGGGTTGGGG ATTGTTTGTG ACGATGCGTG TTTCTGTTTC 
    TGTGATTGGA TTCGAATTCG AATTAGGGTT TTTCGTGAGT ATGTAAGTAT 
    AGTGATTGTA TGTGTTGGGA ATTTAATTAT ATACTGTGTA AATTGTATAT 
    AGTTATGGCT TCTTGTTTTC CCATCAACAT TCGTTGCTTT AGTGATCATG 
    CTGGAATCTG ATTTTGCTTC TTTAAGATTA TGTTAGAGCT AATCATACTT 
    AGATTCACAA TATTAGTCAT TATATTTGCT AAACCTTGAG GCACCTATGG 
    ATTATCATAC GTAATGATAT AGTATTTGTG AAGTTTTCTT TGGTGGGACT 
    TATTTGTTTC ATTGCTAGGC TTATATCTTC TTGATAGCCT TTAGCT

AT5G38470.1

Model type
Protein coding
Short Description
Rad23 UV excision repair protein family
Curator Summary
Encodes a member of the RADIATION SENSITIVE23 (RAD23) family: AT1G16190(RAD23A), AT1G79650(RAD23B), AT3G02540(RAD23C), AT5G38470(RAD23D). RAD23 proteins play an essential role in the cell cycle, morphology, and fertility of plants through their delivery of UPS (ubiquitin/26S proteasome system) substrates to the 26S proteasome.
Computational Description
RADIATION SENSITIVE23D (RAD23D); FUNCTIONS IN: damaged DNA binding, ubiquitin binding, proteasome binding; INVOLVED IN: response to cold, nucleotide-excision repair; LOCATED IN: nucleus; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Heat shock chaperonin-binding (InterPro:IPR006636), Ubiquitin-associated/translation elongation factor EF1B, N-terminal (InterPro:IPR000449), UV excision repair protein Rad23 (InterPro:IPR004806), Ubiquitin-associated/translation elongation factor EF1B, N-terminal, eukaryote (InterPro:IPR015940), Ubiquitin (InterPro:IPR000626), XPC-binding domain (InterPro:IPR015360), Ubiquitin supergroup (InterPro:IPR019955), UBA-like (InterPro:IPR009060); BEST Arabidopsis thaliana protein match is: Rad23 UV excision repair protein family (TAIR:AT3G02540.3); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G38470.2

Model type
Protein coding
Short Description
Rad23 UV excision repair protein family
Curator Summary
Encodes a member of the RADIATION SENSITIVE23 (RAD23) family: AT1G16190(RAD23A), AT1G79650(RAD23B), AT3G02540(RAD23C), AT5G38470(RAD23D). RAD23 proteins play an essential role in the cell cycle, morphology, and fertility of plants through their delivery of UPS (ubiquitin/26S proteasome system) substrates to the 26S proteasome.
Computational Description
RADIATION SENSITIVE23D (RAD23D); FUNCTIONS IN: damaged DNA binding, ubiquitin binding, proteasome binding; INVOLVED IN: response to cold, nucleotide-excision repair; LOCATED IN: nucleus; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Heat shock chaperonin-binding (InterPro:IPR006636), Ubiquitin-associated/translation elongation factor EF1B, N-terminal (InterPro:IPR000449), Ubiquitin-associated/translation elongation factor EF1B, N-terminal, eukaryote (InterPro:IPR015940), UV excision repair protein Rad23 (InterPro:IPR004806), Ubiquitin (InterPro:IPR000626), XPC-binding domain (InterPro:IPR015360), Ubiquitin supergroup (InterPro:IPR019955), UBA-like (InterPro:IPR009060); BEST Arabidopsis thaliana protein match is: Rad23 UV excision repair protein family (TAIR:AT3G02540.3); Has 11236 Blast hits to 6362 proteins in 878 species: Archae - 4; Bacteria - 655; Metazoa - 4543; Fungi - 1476; Plants - 2522; Viruses - 172; Other Eukaryotes - 1864 (source: NCBI BLink).
Link
InterPro Scan - TAIR