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GT18709

CSHL Arabidopsis genetrap mutant lines

Original: GT18709

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT18709

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 1035976 [Map]; Strand: c
      • AT5G03870.1 - [+] show detail - Glutaredoxin family protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: GT18709 - 3-prime edge 
    CGTTACCGAC CGTTTTCATC CCTACATACA CATTCTACCC GACCGGATCG 
    TATCGGTATA TTTATCTCAC TCGACAATTC CCAATTTGCC CTCCTCTTCT 
    AACTTCATCA CTTCCTCAAC ACTTCCTACC ATCCTCCCTT TAACGAATAC 
    CGCAGGTATC TTCACATGTT TCGTTCCCAT AATGCCCCTG ATCTCTTCCT 
    TAAAAACCGA GTGCATCGAC ACATCTCGCT CTGAGAATCG AACTTCGTGT 
    GAATCTAATA TCGATCTTAC CACATTACAA TCCTCAAACG TCTTCCTTAT 
    CCCTCTAAGA GTTGTTATGT AGATCACCAC AGAGTGCTCT CCTCCCGGTG 
    GACATTTCTC TGGGAACTTC TCAAGAATTC TCTCTGTTTT CTCTGTTTTT 
    CTTCTCACTC GACC

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 1035932 [Map]; Strand: c
      • AT5G03860.2 - [+] show detail - malate synthase
        Distance: -959; Region: promoter
      • AT5G03870.1 - [+] show detail - Glutaredoxin family protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: GT18709 - 5-prime edge 
    CTTTATCCCT GGCCGTGGAT GTGGAGGAAT GAGATTTATG ATGTGTGTTG 
    TTTGCAATGG AAGCTGCAAG GTTAGGGAGG AAGAGAAGAA GAGTATGGTT 
    AAGTGTTTGG AGTGTAATGA GAATGGTTTG GTTCTATGTC CAATTTGTTC 
    TTAAAAAAAG AGAATCAGTT TTGCCCTAAT TTTATTGGTT AAATTGGGGA 
    AAATTGACTT AATAATTCTG GAGGCTGACT TTTGAAGGGT TGATTTTGGT 
    TTGTAATGAT TTGGTGAGAG AGAGTTTCTA AAGCCGTGTT CAGTGCTCTT 
    GGTGTGTACT ACTACTAGTT TAATGGAATT TGTTTCTAAT GTTTGTAAAC 
    CTTTTTCATT TTTAAGATTC AATTCAATTC AATGGGTATC ATTCATTAAG 
    AATTTGTCAC CAGATTTGTT TAATTTAGAT TCTCATTAGG TGTTTAGCTT 
    CTTCACTGAA TAATTAAGAT AGTATCAATG ATTTTAAGGA CTTTGGGCTA 
    CGATTATTTT GTTAGTGCAC TTGTCTCTCA AGATATCTAA AACTGATGGA 
    TGAAATAGCT TTTGACTTAT TAAACCGGTA TAGTATATAA CTTGGCAACC 
    TTGTTCAGTT GTTCATGATA GTTTTATACT TTTATATTTA GTCAAGGAAG 
    GAGAAATATT AGGAGAGTCA TACTTGGTTT CTTTATCTTT GTGAAGTTTA 
    GTTTTCCCCT TAATAGGTTA ATATGATCGT TATCATGCAG TCAAAAAATA 
    AGAATTAAGA AATATGACCG TTGTCTTTAC AAGAATTAAT TTATCTGAA

AT5G03860.2

Model type
Protein coding
Short Description
malate synthase
Curator Summary
Encodes a protein with malate synthase activity.
Computational Description
malate synthase (MLS); FUNCTIONS IN: malate synthase activity; INVOLVED IN: glyoxylate cycle; CONTAINS InterPro DOMAIN/s: Malate synthase-like (InterPro:IPR011076), Malate synthase, conserved site (InterPro:IPR019830), Malate synthase A (InterPro:IPR006252), Malate synthase (InterPro:IPR001465).
Link
InterPro Scan - TAIR

AT5G03870.1

Model type
Protein coding
Short Description
Glutaredoxin family protein
Computational Description
Glutaredoxin family protein; FUNCTIONS IN: electron carrier activity, protein disulfide oxidoreductase activity; INVOLVED IN: N-terminal protein myristoylation, cell redox homeostasis; LOCATED IN: cellular_component unknown; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Glutaredoxin (InterPro:IPR002109), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: Glutaredoxin family protein (TAIR:AT4G10630.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR