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GT18726

CSHL Arabidopsis genetrap mutant lines

Original: GT18726

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT18726

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 74726 [Map]; Strand: c
      • AT4G00180.1 - [+] show detail - Plant-specific transcription factor YABBY family protein
        Distance: 0; Region: exon2 (CDS)
      • AT4G00180.2 - [+] show detail - Plant-specific transcription factor YABBY family protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: GT18726 - 5-prime edge 
    CTTTCTCTCT CTCGACGAGA GCTCTTCTTC TTCCTCCGTT TCAACCTTGG 
    CCATTCCTTT TTACCTCCCC CTCCTCCTCC TCCTCCTCCA AATCTTTTGG 
    TACATCGGTT TCATTCATCG AAACAAATTA GGGTTCTTTC ATAAAAAAAA 
    CAGAGAGTAA TAATTAGGGC TTTTCTTCTC GAGAAACGAA AAATTGTGAA 
    ACTCAATCCA AAAATGTTTA ATTTTGTTAG CATCCCGGGA TAGATCTAAG 
    TAGTTTGGCA ATGGCTAGTT AACTAGGGTT TCTTTCGAAA ACATCATATC 
    AAAGTAGTTT GGTTTGATTA GTGTTTTAAG TTTTTTTTGC CAATTAGTTT 
    GCTGATTTCA TTTATTAGGA GGAAATGCGA AGCGGAGGGC AGAATATAAA 
    CATGAACATG ATGATGAGCC ATCACGCTTC AGCTCACCAC CCGAACGAGC 
    ATTTGGTTAT GGCGACTCGC AACGGAAGAT CAGTGGATCA TCTACAAGAG 
    ATGCCTCGGC CACCACCAGC CAATAGACGT AACCTTCCAT CTTCTACTCT 
    TTATTTCAAC ATCTTCATAT ATATATATAA GAAAACAAAA ACCCTAATTC 
    ACAAAACCTT AT

AT4G00180.1

Model type
Protein coding
Short Description
Plant-specific transcription factor YABBY family protein
Curator Summary
YABBY gene family member, likely has transcription factor activity, involved in specifying abaxial cell fate. Along with FIL, involved in patterning of the fruit. GUS reporter gene expression in seedlings is observed in the young leaves and as the leaf matures, expression is restricted to the abaxial tissues of leaves, expression is also observed on either side of the leaf margin in the younger tissues of leaf blades.
Computational Description
YABBY3 (YAB3); CONTAINS InterPro DOMAIN/s: High mobility group, superfamily (InterPro:IPR009071), YABBY protein (InterPro:IPR006780); BEST Arabidopsis thaliana protein match is: Plant-specific transcription factor YABBY family protein (TAIR:AT2G45190.1); Has 469 Blast hits to 469 proteins in 131 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 6; Plants - 442; Viruses - 2; Other Eukaryotes - 15 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G00180.2

Model type
Protein coding
Short Description
Plant-specific transcription factor YABBY family protein
Curator Summary
YABBY gene family member, likely has transcription factor activity, involved in specifying abaxial cell fate. Along with FIL, involved in patterning of the fruit. GUS reporter gene expression in seedlings is observed in the young leaves and as the leaf matures, expression is restricted to the abaxial tissues of leaves, expression is also observed on either side of the leaf margin in the younger tissues of leaf blades.
Computational Description
YABBY3 (YAB3); FUNCTIONS IN: protein binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: fruit development, abaxial cell fate specification, regulation of transcription; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: High mobility group, superfamily (InterPro:IPR009071), YABBY protein (InterPro:IPR006780); BEST Arabidopsis thaliana protein match is: Plant-specific transcription factor YABBY family protein (TAIR:AT2G45190.1); Has 465 Blast hits to 465 proteins in 131 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 6; Plants - 438; Viruses - 2; Other Eukaryotes - 15 (source: NCBI BLink).
Link
InterPro Scan - TAIR