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GT18737

CSHL Arabidopsis genetrap mutant lines

Original: GT18737

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT18737

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    Not mapped

    Flanking Genome Sequence: GT18737 - 3-prime edge
    CCGACCGTTA CCGACCGTTT TCATCCCTAA TGATCAACTC AAGCTGCTGT 
    AAGAATGTTC TACTACATTC TTCAGGAGGT GAGTATCTTA CTATGATGCT
    CCTTCATGAA GCAATGCTGC AGCCACCATC CTGCCGTCTT CATTGATGAT
    GATGTAAGAT GATGAAGCAT TTCTCTGGTG AAATCATAGC ATTGATCATT
    AATCACCGCA GAATACTCCT CACCACCAGA ACAAATACTT GTTTAGTACA
    A
  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 17620920 [Map]; Strand: w
      • AT1G47860.1 - [+] show detail - transposable element gene
        Distance: 0; Region: exon1 (NonCoding)
    Flanking Genome Sequence: GT18737 - 5-prime edge
    CCAACATGGT CTTCTTGTCT CCCGAACATG ATATATTTCA CTCTATTTGT 
    AAAACTTTTG CAAAAAAATC GAAATTTACA GGATTACCAC CTTGTTACGT
    AGCTTTAATT TGATTGAGCT TTATCTGAAA AATAGAAGAT ATAGATGTTA
    GGGGTTAGAT TTGGGCTTGC TTTTCCCAAG GCCCAAATCC AAGTCAAAGG
    CCTAAGCAGA ATGTTAAGTC AAGAGGGTAG GCTCGTCAAA ACCCTGGAGG
    AATGCCCTAC ACGCAGAAGG CTATAAATAC GGAATAGCAT GTCTTGTCAA
    AGGGGATTCC AGGAGGACAC TTAGAAACAA AGAGAAGCTC GTCAGCTCTC
    CCGTCTAACC AGCTCGTCAG CTCTCCCGTC TAACCAGCTC GTCAGCTCTC
    CCGTCTGAAG CATCTCGTCA GCCGGTCCGT CTCAAGTAGC TCACCAGTTC
    GCCCGTCTCA ACCAGCTCGT CAGCTCACCC GTCCGAAGTA TCTCGTCAGC
    CGGTCCGCCT CAAGTAGCTC ATCCGTTCGC CCGTCGCAAG CAGCTCGTCA
    GCTCACCCGT CCGAAGTATC TCGCCAGCCG GTCCGTCTCA AGTAGCTTAT
    CAGTTCGCCG GTCTCAAGCA GCTCGTCAGC TCACCCGTCC GAAGTATCTC
    GCCAGCCGGT CCGTCAAGTA GCTCATCCGT TCGCCCGTCT CAAGCAGCTC
    GTCAGCTCAC CCGTCCGAAA TATCT

AT1G47860.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
non-LTR retrotransposon family (LINE), has a 9.0e-40 P-value blast match to GB:NP_038605 L1 repeat, Tf subfamily, member 30 (LINE-element) (Mus musculus)
Link
InterPro Scan - TAIR