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GT18741

CSHL Arabidopsis genetrap mutant lines

Original: GT18741

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT18741

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 16503283 [Map]; Strand: w
      • AT3G45095.1 - [+] show detail - transposable element gene
        Distance: 0; Region: exon1 (NonCoding)
    Flanking Genome Sequence: GT18741 - 3-prime edge
    CGGTAGAGGT ATTTTACCGA CCGTTACCGA CCGTTTTCAT CCCTAGTTTC 
    ACCCCAATCA ACAAAATTGG ACTTACTCAA ATTTCTGGCC CAGACCATTT
    AATCTGTGGC CCAATCAATT TGCGAACTGG GGACCCAACT CTCAACTAGG
    CTCATACCGA GGCCCATATG TCTTTCCTCA AATACACCAG TACCCTCAAC
    AAGCCCATCT GACGGAAATT CAGTCGACGA CTGACTTCAC ACAAGCTTAC
    ACGATAAAGA CTTTGGTTGA TCCTAATGGT GCACCATGGG TCATGGATTC
    GGCTGCCACT GCACATCTCT CGGGCACAGC AGGTAATCTT CACTCTAATC
    TTAATCATAA CATCACTCAC TCGGTCATCG TTGGTAATGG TTCAAAAATT
    CCTTCAATTT ACGGCTTATG TCAAAAATCA ATTCAATACC CAAATAAAAT
    CTTGTCAATG CGACAATGGA GGAAAATATA ATAACCATGA GTTCAAGAAT
    TATTTGGATT CAAATGAAAT TACAGTTCGT TTTTCTTGTC CTCACACATC
    TCAACAAAAT GGAAAGTCTG AGCGAATGAT ACGCACCATT AACAATGCGA
    TTAGAGCTCT TCTCTTTCAA GCTCAACTCT CGCCAAGTTA TTGGGTAGAA
    GCTCTCCATG TCGATGTCCA CCTATTAAAC ATTCTTCCCT CTTCCGCCAT
    CCAAAACCAA ATCCCCTACA CTCGTCTTTT TAATAAGAAA CCAGTTATGA
    TCACTTGAGA GTATTCGACT GCCTTTGTTT TCAAACTTAA ATCATTCAAT
    CTTC
  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 16503340 [Map]; Strand: w
      • AT3G45095.1 - [+] show detail - transposable element gene
        Distance: 0; Region: exon1 (NonCoding)
    Flanking Genome Sequence: GT18741 - 5-prime edge
    CCTACTTTCT CCCTGGGTGA ACTGATTGTT GTTCTTGTTT CCTCTGAAAT 
    GATTGTTCTT CTTTTTGTTT CCTCTGTAGT TGTTGAATTT ATGCGGCTGT
    ATAGGCGAGG TTGTTGATGG GGTTGCAGAG ACGGTGAGAG CAGTGGATGA
    TAATGAGTTA TCCTTGTGTG TTGCGGAAGC TCGGTGTTAC TTTTTGAGGC
    GAGTTTCCTC CAATTCCAAC ATTGACTTAG CCGTCTCAAA ACTTGGAAAC
    GGCTCTTTGT GTTTGATTAC GTTGACGATG TAATCGTATT TGTCAATGAG
    CCCGTTGAGG AGGTAAGTGA CCAGATGTAT CTCGTTGACC GGTGCATCAA
    CATTGGCGAG CAGATCAGCA AGCGATTTGA GTTTTTGACA ATAAGCCTGA
    ATCGTTTGAT CTCCAATCTC TTGATTACGC AATTCATTAT CCAGTTGGAT
    CGCTCGAGCC TCTTTGTTGT TGCGGAATTG GTTTTCGATT CGGATCCAAA
    CGTCACGTGC AGTGCCTCCA GTCTTGAATG ATGAGCGGAA CAGATCTGGA
    GCAAGAGTTC CATAGATCCA GAGTTTAACG AGTCCGTCGC GTTTCAGCCA
    AGAACCATCG TTATCTCCAC TGGGAAGCAT AGTACCATCA AGGTGTCCTA
    GAACATCGAA CGTCAGACAG CGTGTCTGGA AAAGCTCTCT CCAGCATCAT
    AATTGTGATC ATTGAGATCG AGAATTAAGA GTATGTGGGC TTTGATATTT
    GTACCCCAAA CGCTCGCTCT ATCGCTGGAA AGTGAGC

AT3G45095.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
copia-like retrotransposon family, has a 2.4e-140 P-value blast match to dbj|BAA78426.1| polyprotein (AtRE2-1) (Arabidopsis thaliana) (Ty1_Copia-element)
Link
InterPro Scan - TAIR