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GT18742

CSHL Arabidopsis genetrap mutant lines

Original: GT18742

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT18742

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 432480 [Map]; Strand: w
      • AT2G01940.1 - [+] show detail - C2H2-like zinc finger protein
        Distance: 0; Region: exon1 (5UTR)
      • AT2G01940.3 - [+] show detail - C2H2-like zinc finger protein
        Distance: 0; Region: exon1 (5UTR)
      • AT2G01940.2 - [+] show detail - C2H2-like zinc finger protein
        Distance: -369; Region: promoter
    Flanking Genome Sequence: GT18742 - 3-prime edge 
    AAACGGTAGA GGTATTTTAC CGACCGTTAC CGACCGTTTT CATCCCTAGA 
    TATAGGGTAG AGAGAAAAAG TTCTTTTAAG CTTTCTGCAA CAAACGCTTT 
    TCAAAACTTT TTCTTACGCT CTTCAAAGTT TCTCTTATGT TAATATGATG 
    AAAGCTTTTT AATTTTCTTG AGTCTCTCTC TCTCTAGCTC TCTCTTTGGG 
    TATATATTTT GACTCTTCTT CAAAAACCTA TTTCTCTCTC ATACACTTGA 
    GAGTTGAGAG CAAATAAGGG GTCTTTGATG TCTATATTGC TTCTACTTAT 
    AAAGCTCATT GCTCTATGCC ATCCTTGCGT AGAATGTATA CATACACTCG 
    TGTAGCTAGA GAGAGAGAG

AT2G01940.1

Model type
Protein coding
Short Description
C2H2-like zinc finger protein
Curator Summary
May be involved in an early event in shoot gravitropism such as gravity perception and/or a signaling process subsequent to amyloplast sedimentation as a putative transcription factor in gravity-perceptive cells.
Computational Description
SHOOT GRAVITROPISM 5 (SGR5); CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: indeterminate(ID)-domain 14 (TAIR:AT1G68130.1); Has 34856 Blast hits to 17366 proteins in 321 species: Archae - 1; Bacteria - 0; Metazoa - 32828; Fungi - 237; Plants - 754; Viruses - 1; Other Eukaryotes - 1035 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G01940.2

Model type
Protein coding
Short Description
C2H2-like zinc finger protein
Curator Summary
May be involved in an early event in shoot gravitropism such as gravity perception and/or a signaling process subsequent to amyloplast sedimentation as a putative transcription factor in gravity-perceptive cells.
Computational Description
SHOOT GRAVITROPISM 5 (SGR5); BEST Arabidopsis thaliana protein match is: indeterminate(ID)-domain 14 (TAIR:AT1G68130.2); Has 5058 Blast hits to 4353 proteins in 195 species: Archae - 1; Bacteria - 0; Metazoa - 3999; Fungi - 151; Plants - 716; Viruses - 0; Other Eukaryotes - 191 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G01940.3

Model type
Protein coding
Short Description
C2H2-like zinc finger protein
Curator Summary
May be involved in an early event in shoot gravitropism such as gravity perception and/or a signaling process subsequent to amyloplast sedimentation as a putative transcription factor in gravity-perceptive cells.
Computational Description
SHOOT GRAVITROPISM 5 (SGR5); CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: indeterminate(ID)-domain 14 (TAIR:AT1G68130.1); Has 13187 Blast hits to 8766 proteins in 255 species: Archae - 0; Bacteria - 0; Metazoa - 12025; Fungi - 55; Plants - 746; Viruses - 1; Other Eukaryotes - 360 (source: NCBI BLink).
Link
InterPro Scan - TAIR