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GT18751

CSHL Arabidopsis genetrap mutant lines

Original: GT18751

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT18751

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 301715 [Map]; Strand: w
      • AT5G01770.1 - [+] show detail - HEAT repeat ;WD domain, G-beta repeat protein protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: GT18751 - 3-prime edge 
    TTAGGGGACT TGATGGTCTC CAGGCTCTCT CAATCTTCCG TTACTGTTGT 
    CACCAATCAC CTCTACGACG ACGACGACTA CTGCGCCTCC TCCGCTCACG 
    ATGATTCCCG TGTGTCCATC ATCGCCTCTC CCAGAGTCGC AAGTAGCAGC 
    TATGAGAACC TCTCCGCCGC CACAAGCATG GCATACTTGC CTCAGACTCT 
    TGTGCTCTGT GACCTTAGAC ACGACGACGC ATCCGACATC GTCCAACCCC 
    CAAGATGGCG CCTTAAAGAG CGAGTTAGTT TCTCCTCCCA ATCTATTTTG 
    TTGCCACTAG ATTGTGTACT CTTCTTGCTC ACTCATTTTC AATGGCAGAT 
    GAAAACAGGA TGTGTTGCTC TAGTTATGTG TTTGCACATT ACTGTTGATC 
    CCCCTGATGT TATTAAGATT TCTCCCTGCG CAAGACTCGA ATGCTGGATA 
    GGTCCCAACT TTCACTTAAC TCTCATCTTC TTCT

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 23064534 [Map]; Strand: c
      • AT5G57000.2 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biolo...
        Distance: 0; Region: intron2 (CDS)
      • AT5G57000.1 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biolo...
        Distance: 0; Region: intron2 (CDS)
    Flanking Genome Sequence: GT18751 - 5-prime edge 
    ACTAGTCTGG GATCTTCTCA GTCTCTGCTG TTATGAATAA GGAGAGTTGA 
    AACATTATGG TTATATAATG TTTTAGCATT ACGAGTGGCT ACAGGAGTTT 
    GCTAATGTGT TATAAATTCG CTTTCAGGGA TAAAATGGAA TTCAAATCAG 
    AGAAACCAGG TACCAGTTTT TCTCCCATCA TTGCATCAAA TCGTTCAATT 
    TTTTTTTCGG AACGATTGTT AGTCTCGAGC CTTACAGGGT TTGGTAGTAA 
    CATAACTACA GAGTTTGTCT ATTTTATGAT TTGAACATGG ATACAAATGT 
    GATGTTTTGT

AT5G01770.1

Model type
Protein coding
Short Description
HEAT repeat ;WD domain, G-beta repeat protein protein
Curator Summary
Encodes one of two Arabidopsis RAPTOR/KOG1 homologs. RAPTOR proteins are binding partners of the target of rapamycin kinase that is present in all eukaryotes and play a central role in the stimulation of cell growth and metabolism in response to nutrients. Mutations in this gene have no visible effects on embryo or plant development.
Computational Description
RAPTOR2 (RAPTOR2); FUNCTIONS IN: binding, nucleotide binding; INVOLVED IN: cell growth; LOCATED IN: CUL4 RING ubiquitin ligase complex; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Armadillo-like helical (InterPro:IPR011989), WD40 repeat (InterPro:IPR001680), Regulatory associated protein of TOR (InterPro:IPR004083), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), Armadillo-type fold (InterPro:IPR016024), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: HEAT repeat ;WD domain, G-beta repeat protein protein (TAIR:AT3G08850.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G57000.1

Model type
Protein coding
Computational Description
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G72690.1); Has 153 Blast hits to 116 proteins in 29 species: Archae - 0; Bacteria - 6; Metazoa - 33; Fungi - 7; Plants - 82; Viruses - 0; Other Eukaryotes - 25 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G57000.2

Model type
Protein coding
Computational Description
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G72690.1); Has 141 Blast hits to 104 proteins in 24 species: Archae - 0; Bacteria - 6; Metazoa - 27; Fungi - 8; Plants - 82; Viruses - 0; Other Eukaryotes - 18 (source: NCBI BLink).
Link
InterPro Scan - TAIR