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GT18752

CSHL Arabidopsis genetrap mutant lines

Original: GT18752

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT18752

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 8800705 [Map]; Strand: w
      • AT1G25054.1 - [+] show detail - UDP-3-O-acyl N-acetylglycosamine deacetylase family protein
        Distance: 0; Region: intron3 (CDS)
      • AT1G25054.2 - [+] show detail - UDP-3-O-acyl N-acetylglycosamine deacetylase family protein
        Distance: 0; Region: intron2 (5UTR)
      • AT1G24996.1 - [+] show detail - unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein ...
        Distance: -295; Region: promoter
      • AT1G25025.1 - [+] show detail - unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein ...
        Distance: -103; Region: promoter
    2. Chromosome: 1; Position: 8815083 [Map]; Strand: w
      • AT1G25097.1 - [+] show detail - unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein ...
        Distance: -295; Region: promoter
      • AT1G25112.1 - [+] show detail - unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein ...
        Distance: -103; Region: promoter
    3. Chromosome: 1; Position: 8829461 [Map]; Strand: w
      • AT1G25180.1 - [+] show detail - unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein ...
        Distance: -103; Region: promoter
    Flanking Genome Sequence: GT18752 - 5-prime edge 
    AATTAGGTAC GTTGTGATCC ATTTCAGCTA CTGTTAGGGG TAAGATTTGG 
    GCTTGCTTGG CCCAAGGCCC AAATCCAAGT CAAAGGCCTA AGCAGAATGT 
    TAAGTCAAGA GGGTAGGCTC GTCAAAATCC TGGAGGAGTG TCCTACACGC 
    AGAAGGCTAT AAATACGGAA TAGCATGTCT TGTCAAAGGG GGATTCCGCC 
    GGACACGCAG AGACACAGAG CAGCTCGTCA GCTCACCCGT CCGAAGTATC 
    CCGCCAGCCG GTCCGTCTCA AGCAGCTCGT CAGCTCACCC GTCTCAAGCA 
    GCTCGTCAGC TCTCCCCTCC GAAGTATCCC GCCAGCCGGT CCGTATCAAG 
    CAGCTCGTCA GCTCACCCGT CTCAAGCAGC TCGTCAGCTC TCCCCTCCGA 
    AGTATCTCGC CAGCCGGTCC GTCTCAAACA GCTCGTCAGC TCACCCGTCT 
    CAAGCAGCTC GTCAGCTCAC CCGTCCGAAG TATCTCGCCA GCCGGTCCGT 
    CTCAAGCAGC TCGTCAGCTC ACCCGTCTCA AGCAGATCGT CAGCTCACCC 
    GT

AT1G24996.1

Model type
Protein coding
Computational Description
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G24822.1); Has 11 Blast hits to 11 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 11; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G25025.1

Model type
Protein coding
Computational Description
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G25112.1); Has 8171 Blast hits to 2608 proteins in 364 species: Archae - 0; Bacteria - 499; Metazoa - 1710; Fungi - 974; Plants - 287; Viruses - 83; Other Eukaryotes - 4618 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G25054.1

Model type
Protein coding
Short Description
UDP-3-O-acyl N-acetylglycosamine deacetylase family protein
Computational Description
UDP-3-O-acyl N-acetylglycosamine deacetylase family protein; FUNCTIONS IN: UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase activity; INVOLVED IN: lipid A biosynthetic process; CONTAINS InterPro DOMAIN/s: UDP-3-O-acyl N-acetylglucosamine deacetylase, N-terminal (InterPro:IPR015870), UDP-3-O-acyl N-acetylglucosamine deacetylase (InterPro:IPR004463), Ribosomal protein S5 domain 2-type fold (InterPro:IPR020568), UDP-3-O-acyl N-acetylglucosamine deacetylase, C-terminal (InterPro:IPR011334); BEST Arabidopsis thaliana protein match is: UDP-3-O-acyl N-acetylglycosamine deacetylase family protein (TAIR:AT1G24880.1); Has 5320 Blast hits to 5320 proteins in 1417 species: Archae - 0; Bacteria - 2992; Metazoa - 1; Fungi - 0; Plants - 57; Viruses - 0; Other Eukaryotes - 2270 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G25054.2

Model type
Protein coding
Short Description
UDP-3-O-acyl N-acetylglycosamine deacetylase family protein
Computational Description
UDP-3-O-acyl N-acetylglycosamine deacetylase family protein; FUNCTIONS IN: UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase activity; INVOLVED IN: lipid A biosynthetic process; CONTAINS InterPro DOMAIN/s: UDP-3-O-acyl N-acetylglucosamine deacetylase, N-terminal (InterPro:IPR015870), UDP-3-O-acyl N-acetylglucosamine deacetylase (InterPro:IPR004463), Ribosomal protein S5 domain 2-type fold (InterPro:IPR020568), UDP-3-O-acyl N-acetylglucosamine deacetylase, C-terminal (InterPro:IPR011334); BEST Arabidopsis thaliana protein match is: UDP-3-O-acyl N-acetylglycosamine deacetylase family protein (TAIR:AT1G24880.1); Has 5321 Blast hits to 5321 proteins in 1417 species: Archae - 0; Bacteria - 2995; Metazoa - 1; Fungi - 0; Plants - 55; Viruses - 0; Other Eukaryotes - 2270 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G25097.1

Model type
Protein coding
Computational Description
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G24822.1); Has 12 Blast hits to 12 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 12; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G25112.1

Model type
Protein coding
Computational Description
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G25025.1); Has 8171 Blast hits to 2608 proteins in 364 species: Archae - 0; Bacteria - 499; Metazoa - 1710; Fungi - 974; Plants - 287; Viruses - 83; Other Eukaryotes - 4618 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G25180.1

Model type
Protein coding
Computational Description
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G25025.1); Has 8171 Blast hits to 2608 proteins in 364 species: Archae - 0; Bacteria - 499; Metazoa - 1710; Fungi - 974; Plants - 287; Viruses - 83; Other Eukaryotes - 4618 (source: NCBI BLink).
Link
InterPro Scan - TAIR