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GT18791

CSHL Arabidopsis genetrap mutant lines

Original: GT18791

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT18791

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 26920588 [Map]; Strand: w
      • AT5G67450.1 - [+] show detail - zinc-finger protein 1
        Distance: -639; Region: promoter
    Flanking Genome Sequence: GT18791 - 3-prime edge 
    TACAAAATTT CGGTTTTTGT TTAACTAAAA ACCTTTGAAG AATTCTCGAC 
    AATTGGTGGA AACTTCGTCT TCTGCCTATT TGAAATTAAT GGGTAATTCA 
    TATAGCTGAG TGGGAAATTT AAGAAAAGGC AAGTGGAGAA AATAAAACCA 
    TTGAACAAGC ACTAAATCTA TTGACGGATA ATTAGGAGTG AGTACA

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 26920824 [Map]; Strand: w
      • AT5G67450.1 - [+] show detail - zinc-finger protein 1
        Distance: -875; Region: promoter
      • AT5G67455.1 - [+] show detail - pre-tRNA
        Distance: -848; Region: promoter
    Flanking Genome Sequence: GT18791 - 5-prime edge 
    TCCTACTTTC TCTCTCTCGA CCAGGAGTGC CATATCTTCG GAGCTGTATT 
    AAAATAAACA AAAGAAAAAG AAGAAGAAGC TTTTGCCACT CTGGAGTATG 
    ATCTTTTTCC CCGATTTGTG ATATGTGGTG GCATTGGGAT ATAGCTTATC 
    TGGCGTTCTC TCATTGGCTA AACAAGGCTG GATTCTTCCT CGCGCAACAA 
    GTGGCGCACT AAGAATGGAG AAACTTTTCG GTGGATAGTT AAAGTCGGTA 
    CGAGACTTAA AGCTCAGGCT AACATGACGG TGACACTTCG TTGCACCACC 
    GTCAACACCG TCACATACAC TATCCTATAC TACTTGTTTA CCTTCGAATT 
    CGATTGGTTC GCCTTTTATT TTAGAAATAA TAAAAGCTCA CTTGATAAAA 
    GAATGTACAT AGGATTGTGT GTGTAAGACT TGCCCACTAG TCAGTAGTCC 
    ACCAACCAAA ACACAAAAAT GTTGAGTTAA AAAACAAAAA ACAGAAGAAA 
    CTGAATGAGA GTAAAGTAAT GTGTTAAATA ACAATTGGGG GTCGTTGACG 
    GAGATAAAAA AAGAATGAAA GAAAGTGGAG TAAGTCATAA GTCTTCGAGT 
    TTGTTGTTGT ATTATGAAGT GGGTCGTCGT TACTCATAAC AGTTTTGTCT 
    ACTTAGTCAA TTCAACTGCC AAAAAACGCT TCAACGATTA TCTTAAAAGC 
    TGTCGTTATG CAACTTATGA TTGGGAACTT TTCTACGCGG TTTTAATGTA 
    GAGTCACTTA ATAGAAACAG TCCTT

AT5G67450.1

Model type
Protein coding
Short Description
zinc-finger protein 1
Curator Summary
Encodes zinc-finger protein. mRNA levels are elevated in response to low temperature, cold temperatures and high salt. The protein is localized to the nucleus and acts as a transcriptional repressor.
Computational Description
zinc-finger protein 1 (ZF1); CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: C2H2 and C2HC zinc fingers superfamily protein (TAIR:AT3G49930.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G67455.1

Model type
Pre-tRNA
Short Description
pre-tRNA
Computational Description
tRNA-Met (anticodon: CAT)
Link
InterPro Scan - TAIR