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GT18807

CSHL Arabidopsis genetrap mutant lines

Original: GT18807

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT18807

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 29760433 [Map]; Strand: c
      • AT1G79110.2 - [+] show detail - zinc ion binding
        Distance: 0; Region: exon3 (CDS)
      • AT1G79110.1 - [+] show detail - zinc ion binding
        Distance: 0; Region: exon3 (CDS)
    Flanking Genome Sequence: GT18807 - 3-prime edge 
    GGTAGAGGTA TTTTACCGAC CGTTACCGAC CGTTTTCATC CCTAAGGAGG 
    AGGATGTGTA GAAACTGTGG GGAGGAGGAA TCGTGTGTGT TGCTGTTACC 
    GTGCAGACAC TTGTGCTTGT GTGGAGTATG CGGGTCCAGT GTGCACACGT 
    GTCCCATCTG TACATCTCCT AAAAACGCTA GCGT

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 29760376 [Map]; Strand: c
      • AT1G79110.2 - [+] show detail - zinc ion binding
        Distance: 0; Region: exon3 (CDS)
      • AT1G79110.1 - [+] show detail - zinc ion binding
        Distance: 0; Region: exon3 (CDS)
    Flanking Genome Sequence: GT18807 - 5-prime edge 
    CCTACTTTAT CCCTGCTCCT CCTCCTCCTC TCCGCCTTAT CCTGCGCCTC 
    CCTTCCTAAT CCTACCCTGC GCCTTACCGT TTCTTCACCA CCACCACCAC 
    AGCTGCTTCC GCAGCACGAC TCCGCATCGT CCTCTTCGTT CATGTTATTC 
    TCTAATCCTG CGCCGCGTGA TACGTCCTTA ACCTGCGCCA GAACATGCTC 
    GAGGTTGGTT CGGAGGTGGT TAGCCGTGGC TTCGTTCGTC TGAGCAAGGT 
    CTCTCCAGAT TTGGTTCTCT ATAGAAAGTG ACTTCACTCG CTCCTCAAGC 
    GCGTGGTTAA CCTTGCCGAT CCTCTCTCTT T

AT1G79110.1

Model type
Protein coding
Short Description
zinc ion binding
Computational Description
zinc ion binding; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841); BEST Arabidopsis thaliana protein match is: SBP (S-ribonuclease binding protein) family protein (TAIR:AT3G12920.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G79110.2

Model type
Protein coding
Short Description
zinc ion binding
Computational Description
zinc ion binding; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841); BEST Arabidopsis thaliana protein match is: SBP (S-ribonuclease binding protein) family protein (TAIR:AT3G12920.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR