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GT18818

CSHL Arabidopsis genetrap mutant lines

Original: GT18818

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT18818

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 3253005 [Map]; Strand: w
      • AT5G10336.1 - [+] show detail - unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archa...
        Distance: -940; Region: promoter
      • AT5G10340.1 - [+] show detail - F-box family protein
        Distance: -117; Region: promoter
    Flanking Genome Sequence: GT18818 - 3-prime edge 
    GTAGAGGTAT TTTACCGACC GTTACCGACC GTTTTCATCC CTATATGTAA 
    ACTTGTTGAT GAAGCCCATT AAAACTGAAA CTTGACTAAT TCGGGTCGGA 
    CTCAAATCAA AAACATACAG TATGTTGAAA AAGATGAAGT GAAGACAATG 
    GTTGGTTCCT ATAATCCATA ACGTAGGTTT ATCTTGGTTC AATTTTCAAC 
    TTTAATTTCT TATACATAAA CCGACAACAA TTTTTTTAGT AAAAGTTTTT 
    TTTTTTCTTT CAAAGGGAGA AACAAAACAT CTCAAATCTT TTACAAAATA 
    TTTTTATATC ATTTTTAAAC TTTTGCTCAT GCATAGGGCA GGTAAACCCC 
    TTACGGCTTT ATTAAATAAT TAAAACAACC TGGAATCCTT AAAAAAAGGT 
    TGTCTTCTTA CCTCCCCTCC TTAAATATAA TAAAATAGCT AAATGCCTTA 
    AACCAGTTAT AATGAAAAAT AAATTTTTTG ACTTCCCCAT TTGTTTAATA 
    TGTTCACGGA TTGCCCCGGT GGTTAGCTTT CCAGGAAATC TAACTCCCCT 
    T

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 3253087 [Map]; Strand: w
      • AT5G10340.1 - [+] show detail - F-box family protein
        Distance: -35; Region: promoter
    Flanking Genome Sequence: GT18818 - 5-prime edge 
    GGACTTAGGC TCCATTCCAC CCGCCTAGGT TGGATGGGCG TGCTTCGTTG 
    GAAAGCATGG ATCCGCCTAG GCTGTCCCGA GTGTGAGCGA GGTGTGAGTG 
    TCGCCCATGG GGACATCTCG GTATTTCGTG CGCAAGACGA CTATACTGCC 
    ACCCAAACGG CCTAGGAGAA TCCATGTCAG CCCATGCCAT GACACGCCCA 
    TTCTCTTCGG CGACGAGGTG AAAAGATGCC CGTGGGGACA TCTCGGTAAT 
    ATCATGCGAA CAAGTTATAT ACCGCCACCC CTAGGCCTTG AAGAACACCG 
    AAAAGGATGG TAGTACTATT TAATGTTGGA ACGTCAAATG AGATTAAAAT 
    AAACATAAAT AATTACTAGT GGTATTAATT GCACTTGCAA TTGTTATAAA 
    ATAAGAAAAA ATAGGGAAAA AAAATACAAA TATGAAAAAC AGAAATTTAA 
    GCGTACGATG TTAGAAGACA TAATTGTAAT AGAATTAGAT CGGAACAAAT 
    TCAGATCGAA TGAATAATAG ATTAGATCGA AGATAAGTTT AAATCGAATG 
    AGTAATTAAA TAAGATAGGA ACAAGTTCAA ATTAAATGAA TAATATAATT 
    AGATCAAGAT AAGTTTGAAT CGAATGTTTA GTAGAATTAG ATTTATTTTT 
    CTTTTTCCTT TTGAAAATTT TACTTTTATC ATACTGATTT GATGAAATCC 
    GTTTAAAATT TTAAGATTTC TCAAATTCAT AAAATCAAA

AT5G10336.1

Model type
Protein coding
Computational Description
unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G10340.1

Model type
Protein coding
Short Description
F-box family protein
Computational Description
F-box family protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364), F-box associated domain, type 1 (InterPro:IPR006527), F-box associated interaction domain (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box and associated interaction domains-containing protein (TAIR:AT2G34280.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR