1. Home
  2. Mutant Lines
  3. GT18839

GT18839

CSHL Arabidopsis genetrap mutant lines

Original: GT18839

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT18839

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 17814510 [Map]; Strand: c
      • AT4G37890.1 - [+] show detail - Zinc finger (C3HC4-type RING finger) family protein
        Distance: 0; Region: exon1 (CDS)
      • AT4G37890.2 - [+] show detail - Zinc finger (C3HC4-type RING finger) family protein
        Distance: 0; Region: exon2 (CDS)
      • AT4G37895.1 - [+] show detail - other RNA
        Distance: 0; Region: exon1 (NonCoding)
    Flanking Genome Sequence: GT18839 - 5-prime edge 
    CCTACTTTCT CCCTGGGTTT GTGTTATGAA CAGAGTAGCA TCAGTAGTAG 
    CAAATGTGGA ATTTGTTTAC AAAGCGCGAA AGCTGGAAGA AGGAACGGCG 
    ATTTTCACGG CGGAATGTTC ACATACGTTT CATTTCCCTT GCGTAGCTTC 
    ACGCGCCGGT GATCGGAATC TACTCTCCGA TTGTCCTGTT TGTGGTGCTT 
    CATGGAGAGA AACTTCGCTT CTTCCTCTGT CTCT

AT4G37890.1

Model type
Protein coding
Short Description
Zinc finger (C3HC4-type RING finger) family protein
Computational Description
embryo sac development arrest 40 (EDA40); FUNCTIONS IN: ubiquitin-protein ligase activity, zinc ion binding; INVOLVED IN: polar nucleus fusion; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957), von Willebrand factor, type A (InterPro:IPR002035); BEST Arabidopsis thaliana protein match is: Zinc finger (C3HC4-type RING finger) family protein (TAIR:AT2G22680.1); Has 927 Blast hits to 854 proteins in 205 species: Archae - 0; Bacteria - 269; Metazoa - 39; Fungi - 123; Plants - 345; Viruses - 0; Other Eukaryotes - 151 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G37890.2

Model type
Protein coding
Short Description
Zinc finger (C3HC4-type RING finger) family protein
Computational Description
embryo sac development arrest 40 (EDA40); FUNCTIONS IN: ubiquitin-protein ligase activity, zinc ion binding; INVOLVED IN: polar nucleus fusion; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957), von Willebrand factor, type A (InterPro:IPR002035); BEST Arabidopsis thaliana protein match is: Zinc finger (C3HC4-type RING finger) family protein (TAIR:AT2G22680.1); Has 1867 Blast hits to 1074 proteins in 263 species: Archae - 0; Bacteria - 369; Metazoa - 130; Fungi - 203; Plants - 355; Viruses - 0; Other Eukaryotes - 810 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G37895.1

Model type
Other RNA
Short Description
other RNA
Curator Summary
Potential natural antisense gene, locus overlaps with AT4G37890
Link
InterPro Scan - TAIR