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GT18857

CSHL Arabidopsis genetrap mutant lines

Original: GT18857

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT18857

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 14824667 [Map]; Strand: c
      • AT5G37381.1 - [+] show detail - transposable element gene
        Distance: 0; Region: exon1 (NonCoding)
    Flanking Genome Sequence: GT18857 - 3-prime edge 
    AACGGTAGAG GTATTTTACC GACCGTTACC GACCGTTTTC ATCGGCTGGT 
    GTGGAGCTTC GAGTTCTTAT TTATGTTGAT GACTTGTTGA TTTGTGGTAA 
    TCATCCACGT ATGCTTCAGA GTTTTAAAGA GTACTTGGGA AAATGTTTTC 
    ACATGAAAGA CTTGGGTAAA GCAAAGTACT TTCTTGGCAT TGAGATTGCC 
    CGAAATTCAG AAGGTATATA TCTTTCTCAA AGAAAATATT CTCTTCATCT 
    TGTTACTGAA GCTGGACTTC TTGGTTGTAA GCCCGCTGCA ACTCCGATGG 
    AACAAAATCA CAAGTTGGAG ATGAATGAGA GTGAGTTTCT TCCCCGACCT 
    GAAGAATATA GGAGGTTGGT TGGTCGTCTC ATCTATCTT

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 14824594 [Map]; Strand: c
      • AT5G37381.1 - [+] show detail - transposable element gene
        Distance: 0; Region: exon1 (NonCoding)
    Flanking Genome Sequence: GT18857 - 5-prime edge 
    CTTTCTCCCG TGAGAGATAA ATAAAGAGTA GTCTGAATAA GATTGAACAA 
    ATCCAAACTT TAGCAACGCC GAAGAGAGCT TAGAGAACCA ACACCGCGAG 
    GCTTGTTTAA GCCCATATAG AGACTTATGG AGACGACAAA CCTTCTTCGG 
    ATCTGAATGA CGAAAACCAA CCGGTAATTT CATGTATACT TCTTCTTCTC 
    ACTCAACAAG GAGAAAGGCA TTGTGAACAT CCATTTGGTG AACTTCCCAT 
    TTCTCGGCTG CCACAATACG TAACAAACTA CGGACCGTCT TCATCATAAC 
    CACATGAGCA AACGTTTCAT TATAGTCCTC ACCTTCAACT TGACGATTGC 
    CACATGCGAC TAATCGAGCT TTATACCGTT CAAGAGAGCC ATCGGCATTA 
    AGCTTGATTT TGTACACCCA CTTATTGTTA ATCGCT

AT5G37381.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
copia-like retrotransposon family, has a 1.5e-121 P-value blast match to GB:BAA78424 polyprotein (Ty1_Copia-element) (Arabidopsis thaliana)gi|4996363|dbj|BAA78424.1| polyprotein (AtRE2) (Arabidopsis thaliana) (Ty1_Copia-element)
Link
InterPro Scan - TAIR