1. Home
  2. Mutant Lines
  3. GT18882

GT18882

CSHL Arabidopsis genetrap mutant lines

Original: GT18882

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT18882

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 1918243 [Map]; Strand: w
      • AT5G06280.1 - [+] show detail - unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein ...
        Distance: 0; Region: intron1 (3UTR)
      • AT5G06290.1 - [+] show detail - 2-cysteine peroxiredoxin B
        Distance: -970; Region: promoter
    Flanking Genome Sequence: GT18882 - 5-prime edge 
    CTTTCTCCCT GGCTATACTA CTCTAAGCCA CAATCTCAAT AACCGGGTTT 
    TTAAACCGCC GGTTAACCGG AGTTTCACAT GACTTCAAAT TGACCACAGA 
    CGAACAAAAA AAAAGAATTT GGAAAACCCC AAAATCCAAA ATTTTTTCCC 
    TTGGAAAGGT TTGGAAAATG GAACCCTTTT TTGGATTCCA TTCCATTTTT 
    GGAAAAACCC ATTTTTCCCC CCAATCCAAG TTTTTTTGGC CATCCAAGGG 
    ACCCCAAACC GTTGGAAAAT CCCATCCAAC CCCCCGTCCA AGGACCGGCT 
    CCCGGGGGGA TAATGGAACC CTTCCCCACG GGAGAATTGG AAACCCGCCA 
    AATCCTCCCA ACAAATTAGC CCCCGTGGGT GGAAAATAAA ACAAACCACT 
    TGGTTTACCG GGCCATTTCC AATCCGGGTT TCCCCCGGGG GGGGGGGATT 
    TACCAGGAAA CCACCTCCCG TGAACCGCCG GAAATTGGGG GGAAAAGTTA 
    ACCGAAAAAA A

AT5G06280.1

Model type
Protein coding
Computational Description
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G52520.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G06290.1

Model type
Protein coding
Short Description
2-cysteine peroxiredoxin B
Curator Summary
Encodes a 2-Cys peroxiredoxin (2-Cys PrxB) that contains two catalytic Cys residues.
Computational Description
2-cysteine peroxiredoxin B (2-Cys Prx B); FUNCTIONS IN: peroxiredoxin activity, antioxidant activity; INVOLVED IN: response to cold, defense response to bacterium; LOCATED IN: apoplast, stromule, chloroplast stroma, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peroxiredoxin, C-terminal (InterPro:IPR019479), Thioredoxin fold (InterPro:IPR012335), Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen (InterPro:IPR000866), Thioredoxin-like (InterPro:IPR017936), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: Thioredoxin superfamily protein (TAIR:AT3G11630.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR