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GT18888

CSHL Arabidopsis genetrap mutant lines

Original: GT18888

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT18888

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 20523056 [Map]; Strand: w
      • AT5G50390.1 - [+] show detail - Pentatricopeptide repeat (PPR-like) superfamily protein
        Distance: -76; Region: promoter
    Flanking Genome Sequence: GT18888 - 3-prime edge 
    TCAGACATTG CGGAGCATCA AGTAAACAAA TCCATCTTTC CACGGTGCTT 
    TCTCGGGCGA TTCCGATCAA TATGATCTGG ATCCTCTGTT TGCTCCTAAT 
    CTCTTATTGA CCCCATTCTC TTCCAATCAT GGAGATTCCA CTCTCGCGTT 
    ACCAGAGCAT AAGATTAGAC GAGATTCGAG ACTCTTCTTC CAATCCCAAG 
    GTTCTCACTT TCCCGCGAAA ATTCTCGTTA CGAGGAAGAA GATGGAAGAA 
    CCCATTTGGA AGACTCAGTT GTTCTTCTGT AGTTCAAGGT CTGAAACCAA 
    AACCAAAGCT GAAACCAGAA CCAATTAGAA TCGAGGTTAA GGAATCGAAA 
    GATCAGATTT TGGATGATAC CCAGATCAGT AAATCTGGTG TAACGATTTG 
    TAGTCAGATA GAGAAGTTGG TTTTGTGTAA TAGATTCAGA GAAGCTTTTG 
    AATTGTTTGA GATTCTGGAG ATT

AT5G50390.1

Model type
Protein coding
Short Description
Pentatricopeptide repeat (PPR-like) superfamily protein
Computational Description
Pentatricopeptide repeat (PPR-like) superfamily protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT3G02010.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR