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GT18894

CSHL Arabidopsis genetrap mutant lines

Original: GT18894

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT18894

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 14665800 [Map]; Strand: w
      • AT2G34760.1 - [+] show detail - pseudogene, tubulin beta chain -related, similar to beta-7 tubulin GI:416149 ...
        Distance: 0; Region: exon1 (NonCoding)
      • AT2G34770.1 - [+] show detail - fatty acid hydroxylase 1
        Distance: 0; Region: exon1 (5UTR)
    Flanking Genome Sequence: GT18894 - 5-prime edge 
    TCAACGGTCC AGATTCCATC TAGAAGATAT ATTACACCGA CCTTGTTTTC 
    TCTATCTAAT TCTCACACAC ACACCAACGC AAACCTCCAA AACAGGGCCG 
    GGGCGATTCA TTCACAATCT CGGCGATTCT CTCTTCCGTC TCGAGTCGCT 
    GAGATCCATC AGGTTCGTTT CTATTCGAAT CTATTCTCTT GAATCCGTAT 
    TTGTTTCCTT TCCTCCCTAG ATAGATTTCA TTTTTCTGGA AACATTGAGA 
    TTTCCATTGA TTTGATGTTT AGTGGTTTAG ATCGGATAAT TTTTGTTGTT 
    GACTCTCAAA AAACGAATCA TAACTATCTT AAAACTTTGT TTACGCATTG 
    TTATTGAAGG CTAAATAAAA AATGCTCAAT TGTTGCTAGA AAGGAAGGTG 
    TCTCGAAAAC ATGTGAATTT ATTTCTTGAG CCTCATTGTT TCTCACTGCA 
    ACAATAGTGA ATGATTCAAT TGAAAAGAAC TTTTGGTTAA GCCATTTTTC 
    TCTTTAATAG ATTATGTGTC TCAACTCAAT TAGGAACTGT GTGTTTTTTT 
    GTTTCCTTGA TGTTAACTTG TGAGTTGATT TATTTGGGTA GTTTACTTGT 
    ATATATATTT GGGTGGTGGG TCCTGGAGGG AAATGAGTTG AGAGGGAGCT 
    CTGTTCATAC ATTCT

AT2G34760.1

Model type
Pseudogene
Computational Description
pseudogene, tubulin beta chain -related, similar to beta-7 tubulin GI:416149 from (Zea mays); blastp match of 47% identity and 3.0e-15 P-value to SP|Q41784|TBB7_MAIZE Tubulin beta-7 chain (Beta-7 tubulin). (Maize) {Zea mays}
Link
InterPro Scan - TAIR

AT2G34770.1

Model type
Protein coding
Short Description
fatty acid hydroxylase 1
Curator Summary
encodes a fatty acid hydroxylase, required for the AtBI-1-mediated suppression of programmed cell death.
Computational Description
fatty acid hydroxylase 1 (FAH1); FUNCTIONS IN: fatty acid alpha-hydroxylase activity, catalytic activity; INVOLVED IN: very long-chain fatty acid metabolic process, negative regulation of programmed cell death; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Fatty acid hydroxylase (InterPro:IPR006694); BEST Arabidopsis thaliana protein match is: fatty acid hydroxylase 2 (TAIR:AT4G20870.1); Has 784 Blast hits to 784 proteins in 354 species: Archae - 0; Bacteria - 388; Metazoa - 105; Fungi - 140; Plants - 78; Viruses - 0; Other Eukaryotes - 73 (source: NCBI BLink).
Link
InterPro Scan - TAIR