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GT18906

CSHL Arabidopsis genetrap mutant lines

Original: GT18906

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT18906

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 92521 [Map]; Strand: c
      • AT4G00220.1 - [+] show detail - Lateral organ boundaries (LOB) domain family protein
        Distance: 284; Region: intergenic
      • AT4G00225.1 - [+] show detail - pseudogene, similar to sucrose transporter SUC1, blastp match of 53% identity...
        Distance: 123; Region: intergenic
    Flanking Genome Sequence: GT18906 - 5-prime edge
    CCTACTTTCT CCCTGAATCA ATGCATGCTT CGAAGATGTT GTTAAAATAG 
    TGTGGACTAC AAAGCAAACC AGAGTATCAA ACTCAATTGA GTCGGGTTTA
    AATAATATTT TGGGCTGCTT GATATAAGAA AAAAAAACTT TATTGAACCC
    ATTTAAGGCC CAATTATAAG TGATAGGGAA AATGAGAAAT GAGACTCATT
    GGT

AT4G00220.1

Model type
Protein coding
Short Description
Lateral organ boundaries (LOB) domain family protein
Curator Summary
Encodes a protein containing a LOB domain that is expressed in embryos, flower primordium and lateral floral organ boundaries. Overexpression is correlated with activation of STM and KNAT1 and down regulation of PIN1 and reduced auxin transport levels. Ectopic expression in plants results in premature termination of the shoot apical meristem and small, lobed leaves.
Computational Description
JAGGED LATERAL ORGANS (JLO); CONTAINS InterPro DOMAIN/s: Lateral organ boundaries, LOB (InterPro:IPR004883); BEST Arabidopsis thaliana protein match is: LOB domain-containing protein 18 (TAIR:AT2G45420.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G00225.1

Model type
Pseudogene
Computational Description
pseudogene, similar to sucrose transporter SUC1, blastp match of 53% identity and 2.0e-09 P-value to GP|28371870|gb|AAO38059.1||AY190281 sucrose transporter SUC1 {Brassica napus}
Link
InterPro Scan - TAIR