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GT18915

CSHL Arabidopsis genetrap mutant lines

Original: GT18915

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT18915

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 358393 [Map]; Strand: w
      • AT5G01910.1 - [+] show detail - unknown protein; Has 66 Blast hits to 66 proteins in 27 species: Archae - 0; ...
        Distance: 0; Region: exon1 (CDS)
      • AT5G01910.2 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biolo...
        Distance: 0; Region: exon1 (CDS)
      • AT5G01920.1 - [+] show detail - Protein kinase superfamily protein
        Distance: -714; Region: promoter
    Flanking Genome Sequence: GT18915 - 3-prime edge 
    CTGCTAAAGG AGAGAGATGA AACCATGGAT CTGCACATGA GCCATCTTCT 
    CCAGAGAGGA GAGACACAGA AAAGCCTTGA AATCCAGGTC GATCGCCTCT 
    TTCGATTGAA GGAGCTCCAC GCCTATTCCT CTGTAAGCAG CAAACATATA 
    TAGTAGCTTC TTTCTTTTAG TTATGAAGAG TATTTAAAGT AATTTGCCGT 
    TTGATTTGGA CAACAGAAGA TTTCTCCAAT CCGATCTCTG AGAGCCAAGG 
    AGCAGCAGGA GAAGATGAGA CGCTTCACCT TCGTAATAAA TGTTTCAACA 
    ACTACTCTCC CTTTCCTTCT TTCTTCCCAT TCATTTATG

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 358585 [Map]; Strand: w
      • AT5G01910.1 - [+] show detail - unknown protein; Has 66 Blast hits to 66 proteins in 27 species: Archae - 0; ...
        Distance: 0; Region: exon1 (CDS)
      • AT5G01910.2 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biolo...
        Distance: 0; Region: exon1 (CDS)
      • AT5G01920.1 - [+] show detail - Protein kinase superfamily protein
        Distance: -522; Region: promoter
    Flanking Genome Sequence: GT18915 - 5-prime edge 
    CAAGATTTCA TATTCACGAT CCTCACTCAC ATCTACTTCT TCTTCTCTCT 
    CCAGCAGCTT TGGGCTTCAC GAAGAAAGCA TCCTCCTTTG GGGTCTGGTA 
    GATGTTTCTC GGCTGCAGTG CTTTTCGACC TGAACATTTC ATTTCTTTTT 
    GTGTTTTGGA TGATGAATGT TTGAGATTGA GAGAAAAGCA AAGCAAAGCA 
    AGCAGAGCAA CTTATCTCAA AATGCTTTTT TAGAACCAAA AATGATGTCC 
    ACAATAAGAT TATAGAAAGG AGAGGCCATT TCACACAGAA AGAGAAGAAT 
    CATAAGCAAT ACGACAAGAC AAAAAAAGAA AGAGAAAAAA AGAAAGTAGC 
    CGTTAAGCGC CGAATCCAAT TCAAATTCAA AATAAATCTT TTTTTTTTGG 
    TTTTTGGAAA AGTAGGAAGG AATTGGGGGA CAAAAAACGA AAGGTAAACC 
    CTCGGGGCTG GTTACAAATA ACCTTTTAAT TGGAACAAAT TGAAAATTTT 
    GGGGTTATTT GGGCCCCTTT TGGAAA

AT5G01910.1

Model type
Protein coding
Computational Description
unknown protein; Has 66 Blast hits to 66 proteins in 27 species: Archae - 0; Bacteria - 2; Metazoa - 18; Fungi - 7; Plants - 29; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G01910.2

Model type
Protein coding
Computational Description
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 11 growth stages; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G01920.1

Model type
Protein coding
Short Description
Protein kinase superfamily protein
Curator Summary
Chloroplast thylakoid protein kinase STN8 is specific in phosphorylation of N-terminal threonine residues in D1, D2 and CP43 proteins, and Thr-4 in PsbH protein of photosystem II. Phosphorylation of Thr-4 in the wild type required both light and prior phosphorylation at Thr-2.
Computational Description
STN8; FUNCTIONS IN: protein kinase activity, kinase activity; INVOLVED IN: photosystem II stabilization; LOCATED IN: thylakoid, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: STN7 (Stt7 homolog STN7); kinase/ protein kinase (TAIR:AT1G68830.1); Has 33057 Blast hits to 33030 proteins in 1682 species: Archae - 26; Bacteria - 4053; Metazoa - 14243; Fungi - 4538; Plants - 3212; Viruses - 96; Other Eukaryotes - 6889 (source: NCBI BLink).
Link
InterPro Scan - TAIR