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GT18921

CSHL Arabidopsis genetrap mutant lines

Original: GT18921

Phenotypes

Morphological phenotypes

Original description

  • embryo lethal (unconfirmed)
Anatomical entity
/structure development stage
Phenotypes
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)

Original: GT18921

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 754161 [Map]; Strand: c
      • AT4G01740.1 - [+] show detail - Cysteine/Histidine-rich C1 domain family protein
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: GT18921 - 3-prime edge
    TATTTTACCG ACCGTTACCG ACCGTTTTCA TCCCTACCAC CAACTCACCC 
    TGCTCCCAAG TCTCCGTTCT TTTTTATGTA GTGCTTGCGG TTTGAATGGC
    GACCGAAGCC CTTACATATG TGTTCAATGT GACTTTATGA TCCATCAAGT
    CTGTCTTCAT CTCACTCGA
  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 754092 [Map]; Strand: c
      • AT4G01740.1 - [+] show detail - Cysteine/Histidine-rich C1 domain family protein
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: GT18921 - 5-prime edge
    CTTTCTCCCT GGCTGGAGGT CATGAGCTTT CAAATTCCAA AGATATCGTT 
    GTGGTGGATT TAAAACACAA GACATATCCA AGGTGAAATT ACACAAAGAA
    CAATGATAAA ACAATCCAAC TTCAATTTCT TTTGCGCATA GACGACATTT
    TCGGTCAGAA TAATTCGGTA GTTGACCAGT GTGAAGCTTA AGAGGGTGCC
    ACGGGTGGTA AGAGTGGTTT ACCTCTAAAG TGTGATTTAC CTCTGGCGGA
    TGCCATACGC AATCTTTGTG GAAGAATAAA TCGCATTCAT AACATTTGTA
    TGGAAACCCA TAATCATTAG TGCCACACTT AGCATCACAA TCAAACTGGA
    TCAGCTCCTT GAGAAGGTTG AGCTTGTGGT GATGCGTCTT GGAAATGTTA
    ATAACCTCTG GTGGTGGATA CTTGGCACAG TATAGATCCA CGTTGAAGTC
    GCAGATCTCA CAACGATAGA ATAATAGATA CGCGATGTAC CTTCCACATA
    AATCGCAGTC ATGGCTATTT CCTCTAGTAC TTAGAAGCTG AAGAGTGTGA
    TTGGGGTGAG ATGGATGCTC GATATATTCG GAGGACTCGC CACATTTCTT
    GTGGACGAAA ATATCACAGA TTTTGCAGTA ATAACCATCA CCAATAGATT
    CAAAACGGCC ACAGCAATCA CCTCTTCTCA GATCATTCCA AGGCATCATA
    CGATGCTTGT GGATCAACGG CATTAACACT CCTTCGGAAT CCATGGTCGT
    AAACTACAAG ATTTTGA

AT4G01740.1

Model type
Protein coding
Short Description
Cysteine/Histidine-rich C1 domain family protein
Computational Description
Cysteine/Histidine-rich C1 domain family protein; CONTAINS InterPro DOMAIN/s: DC1 (InterPro:IPR004146), C1-like (InterPro:IPR011424); BEST Arabidopsis thaliana protein match is: Cysteine/Histidine-rich C1 domain family protein (TAIR:AT4G01930.1); Has 1534 Blast hits to 622 proteins in 21 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 1528; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).
Link
InterPro Scan - TAIR