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GT18922

CSHL Arabidopsis genetrap mutant lines

Original: GT18922

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT18922

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 15970113 [Map]; Strand: w
      • AT5G39870.1 - [+] show detail - Protein of unknown function (DUF1216)
        Distance: -67; Region: promoter
      • AT5G39880.1 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biolo...
        Distance: -774; Region: promoter
    Flanking Genome Sequence: GT18922 - 3-prime edge 
    TACCGACCGT TTTCATCCCT ATATCCACCA GTTTTCGTCT TAAATAAATT 
    CTTCGTTTTC ATGATTCGAA AGATAGAGTC

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 15970136 [Map]; Strand: w
      • AT5G39870.1 - [+] show detail - Protein of unknown function (DUF1216)
        Distance: -90; Region: promoter
      • AT5G39880.1 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biolo...
        Distance: -751; Region: promoter
    Flanking Genome Sequence: GT18922 - 3-prime edge 
    GGTAGAGGTA TTTTACCGAC CGTTACCGAC CGTTTTCATC CCTATATCCA 
    CCAGTTTTCG TCTTAAATAA ATTCTTTGTT TTCATGATTC TAAAGATAGA 
    GTCCTTCATA TTCCTATATA TGAGACTTTA GAGTCTGCAA AAGTAAAACA 
    AAATTGTCAA TCTATGTTTC TCATACAATG ACAAGATTTC AACATTTTCT 
    CTGTTTTACC ATCCTTGTTG CAACCATAAC CTTTTTCAAG GTAGCTTC

AT5G39870.1

Model type
Protein coding
Short Description
Protein of unknown function (DUF1216)
Computational Description
Protein of unknown function (DUF1216); LOCATED IN: endomembrane system; EXPRESSED IN: petal, male gametophyte, flower, cultured cell; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1216 (InterPro:IPR009605); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1216) (TAIR:AT3G28980.1); Has 120 Blast hits to 86 proteins in 18 species: Archae - 2; Bacteria - 5; Metazoa - 4; Fungi - 1; Plants - 88; Viruses - 0; Other Eukaryotes - 20 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G39880.1

Model type
Protein coding
Computational Description
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G28750.1); Has 25 Blast hits to 25 proteins in 3 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 23; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR