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GT18924

CSHL Arabidopsis genetrap mutant lines

Original: GT18924

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT18924

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 175589 [Map]; Strand: w
      • AT2G01400.1 - [+] show detail - unknown protein; Has 19 Blast hits to 19 proteins in 6 species: Archae - 0; B...
        Distance: 0; Region: exon2 (3UTR)
      • AT2G01410.1 - [+] show detail - NHL domain-containing protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: GT18924 - 3-prime edge 
    TGCCAGGCTG GTGTTGTTAA ACGGTGATCT GATTGCGGCG GACGGGATGA 
    CGAGGAGACG GAGAGACGGC ACAGTCATGG TGGTGTCACA CAAGAAGCTT 
    TGGTTACTCA AAAGCCAAGA TAGCTGGAGC GAAGGAGTTG TTTACGACGA 
    AATTGACCTC GACATCGAGG GCTTTCCGAC CGCGGTGACG GTTGCGGGAC 
    GGGATAGGAC ATATGCGTTG TATGGCAGAG TGATGGAGGG GATAATG

  • 3 prime edge [+] show sequence

    Not mapped

    Flanking Genome Sequence: GT18924 - 3-prime edge 
    TTACCCGACG TTACCGACCG TTTTCATCCC TATACACACA TTCTACCCGA 
    CCGGATCGTA TCGGTA

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 175774 [Map]; Strand: w
      • AT2G01410.1 - [+] show detail - NHL domain-containing protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: GT18924 - 5-prime edge 
    AGCCTTTGCT GATGTACACG ATCCCGTTCA AGCCGCAATC GCGGAAACTT 
    GCGTCCGCGT CTGCCGCCAC AGGCTGCGAA TTGAACAACG GCGATTTGGA 
    GAAGATCGAA GCTGCGCCGT CGCGATCGAC TTTCCAGATG AAGTTTTTGG 
    CTGAGTTGGT GACGTAAGCG TTTCCTTTGA AATCAACCGC CACGTCATTG 
    GCGACATCAC GAGCGATGTC TTCGTCGTCT CCGGGAAGAG ACGGGAGAGG 
    AGAGAGGAAT ACACGACGGC CTCCGCTGCG GAGATCGTAG GAGGCTAGGG 
    CACTGAAGGG AGGGAGAGGC GGCAAACTCT GGATACAGGC AAGGAGACGG 
    CGATTAGTAG AGTCAACGGC GAGACCGAGG ATAGTGGAGT TCTCCGGTAG 
    ATCGAGATCG GAGATTAGGG TTTCGATGAC TCCAGCGTCG GAGACGGAAT 
    GAATTGTGCG GCTGTGGAGA GAACCGACTA GAAAATGCTG GTCCCTTGGA 
    TCCCAGGTTA GTCCCTCCGG GTAGAGTCCC GGCGATCGGA AGTTGATAAC 
    GTGGCGGTTA TCGGCGGAGG AGGGAATCAG AAGTCCCAGG AACAAGACGG 
    CGAAGAGAAT TGGGAAGACG AGGAAGGATC TGTATCGAGT GGAAGACGAC 
    GACGAC

AT2G01400.1

Model type
Protein coding
Computational Description
unknown protein; Has 19 Blast hits to 19 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 19; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G01410.1

Model type
Protein coding
Short Description
NHL domain-containing protein
Computational Description
NHL domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Six-bladed beta-propeller, TolB-like (InterPro:IPR011042); BEST Arabidopsis thaliana protein match is: Calcium-dependent phosphotriesterase superfamily protein (TAIR:AT2G16760.1); Has 137 Blast hits to 137 proteins in 39 species: Archae - 0; Bacteria - 57; Metazoa - 0; Fungi - 0; Plants - 76; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).
Link
InterPro Scan - TAIR