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GT18944

CSHL Arabidopsis genetrap mutant lines

Original: GT18944

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT18944

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 89639 [Map]; Strand: c
      • AT4G00220.1 - [+] show detail - Lateral organ boundaries (LOB) domain family protein
        Distance: -397; Region: promoter
    Flanking Genome Sequence: GT18944 - 3-prime edge
    GGTATTTTAC CGACCGTTAC CGACCGTTTT CATCCCTAAG TATTAGATTG 
    AATGTTCATA TATTACAATT GGTATATACC ATAAGATAGT TGTGTGGTTC
    GATGTAACAA AAATAAAATT AAACCAGAAG TAGAAAAAGT GAAGGAAAGG
    GAATAACAAT GAAGAAGTTG AAAGATATGG AATGTTTTGC TTCACGCAAA
    GAGCTTAACA CGAGACAAGT ACGCTCCATC GCGTTGCTTT GAAGTCTTTT
    TTTTCTTCTT CTTCTTCTTG TCTTAACCTC TTTTTTTTTT TTAAGCCTGG
    GAAAAAACAA GCCCAATAAA ATTTTTTTTT CCCTTTTTTT AAAATCCCCC
    AAAACCCAAC CC
  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 89632 [Map]; Strand: c
      • AT4G00220.1 - [+] show detail - Lateral organ boundaries (LOB) domain family protein
        Distance: -404; Region: promoter
    Flanking Genome Sequence: GT18944 - 3-prime edge
    CGGTAGAGGT ATTTTACCGA CCGTTACCGA CCGTTTTCAT CCCTAAGTAT 
    TAGATTGAAT GTTCATATAT TACAATTGGT ATATACCATA AGATAGTTGT
    GTGGTTCGAT GTAACAAAAA TAAAATTAAA CCAGAAGTAG AAAAAGTGAA
    GGAAAGGGAA TAACAATGAA GAAGTTGAAA GATATGGAAT GTTTTGCTTC
    ACGCAAAGAG CTTAACACGA GACAAGTACG CTCCATCGCG TTGCTTTGAA
    GTCTTTTTTT TCTTCTTCTT CTTCTTGTCT TAACCTCTTT TTTTTTTTTT
    AGCCTGGGAA AAAACAAGCC AAATAAAATT TTTTTTTCCC TTTTTTTTTT
    ACCCCCCAAC ACCCAACCCC TATTTTTGTT AACGCCAAAA CCCCCCCTTC
    TCTT

AT4G00220.1

Model type
Protein coding
Short Description
Lateral organ boundaries (LOB) domain family protein
Curator Summary
Encodes a protein containing a LOB domain that is expressed in embryos, flower primordium and lateral floral organ boundaries. Overexpression is correlated with activation of STM and KNAT1 and down regulation of PIN1 and reduced auxin transport levels. Ectopic expression in plants results in premature termination of the shoot apical meristem and small, lobed leaves.
Computational Description
JAGGED LATERAL ORGANS (JLO); CONTAINS InterPro DOMAIN/s: Lateral organ boundaries, LOB (InterPro:IPR004883); BEST Arabidopsis thaliana protein match is: LOB domain-containing protein 18 (TAIR:AT2G45420.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR