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GT18944

CSHL Arabidopsis genetrap mutant lines

Original: GT18944

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT18944

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 89639 [Map]; Strand: c
      • AT4G00220.1 - [+] show detail - Lateral organ boundaries (LOB) domain family protein
        Distance: -397; Region: promoter
    Flanking Genome Sequence: GT18944 - 3-prime edge 
    GGTATTTTAC CGACCGTTAC CGACCGTTTT CATCCCTAAG TATTAGATTG 
    AATGTTCATA TATTACAATT GGTATATACC ATAAGATAGT TGTGTGGTTC 
    GATGTAACAA AAATAAAATT AAACCAGAAG TAGAAAAAGT GAAGGAAAGG 
    GAATAACAAT GAAGAAGTTG AAAGATATGG AATGTTTTGC TTCACGCAAA 
    GAGCTTAACA CGAGACAAGT ACGCTCCATC GCGTTGCTTT GAAGTCTTTT 
    TTTTCTTCTT CTTCTTCTTG TCTTAACCTC TTTTTTTTTT TTAAGCCTGG 
    GAAAAAACAA GCCCAATAAA ATTTTTTTTT CCCTTTTTTT AAAATCCCCC 
    AAAACCCAAC CC

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 89632 [Map]; Strand: c
      • AT4G00220.1 - [+] show detail - Lateral organ boundaries (LOB) domain family protein
        Distance: -404; Region: promoter
    Flanking Genome Sequence: GT18944 - 3-prime edge 
    CGGTAGAGGT ATTTTACCGA CCGTTACCGA CCGTTTTCAT CCCTAAGTAT 
    TAGATTGAAT GTTCATATAT TACAATTGGT ATATACCATA AGATAGTTGT 
    GTGGTTCGAT GTAACAAAAA TAAAATTAAA CCAGAAGTAG AAAAAGTGAA 
    GGAAAGGGAA TAACAATGAA GAAGTTGAAA GATATGGAAT GTTTTGCTTC 
    ACGCAAAGAG CTTAACACGA GACAAGTACG CTCCATCGCG TTGCTTTGAA 
    GTCTTTTTTT TCTTCTTCTT CTTCTTGTCT TAACCTCTTT TTTTTTTTTT 
    AGCCTGGGAA AAAACAAGCC AAATAAAATT TTTTTTTCCC TTTTTTTTTT 
    ACCCCCCAAC ACCCAACCCC TATTTTTGTT AACGCCAAAA CCCCCCCTTC 
    TCTT

AT4G00220.1

Model type
Protein coding
Short Description
Lateral organ boundaries (LOB) domain family protein
Curator Summary
Encodes a protein containing a LOB domain that is expressed in embryos, flower primordium and lateral floral organ boundaries. Overexpression is correlated with activation of STM and KNAT1 and down regulation of PIN1 and reduced auxin transport levels. Ectopic expression in plants results in premature termination of the shoot apical meristem and small, lobed leaves.
Computational Description
JAGGED LATERAL ORGANS (JLO); CONTAINS InterPro DOMAIN/s: Lateral organ boundaries, LOB (InterPro:IPR004883); BEST Arabidopsis thaliana protein match is: LOB domain-containing protein 18 (TAIR:AT2G45420.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR