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GT19008

CSHL Arabidopsis genetrap mutant lines

Original: GT19008

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT19008

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 6812843 [Map]; Strand: c
      • AT5G20181.1 - [+] show detail - unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archa...
        Distance: 284; Region: intergenic
      • AT5G20190.1 - [+] show detail - Tetratricopeptide repeat (TPR)-like superfamily protein
        Distance: -1250; Region: intergenic
    Flanking Genome Sequence: GT19008 - 3-prime edge 
    TATTTTACCG ACCGTTACCG ACCGTTTTCA TCCCTATGAC GTATTGGTCA 
    CGGTTGTTCT TGAATAATTG AGTTGTTCAC TTGTCGTCTG ATTAATGTGT 
    TTGGTTGAAT TCTAACTTTA AAGTTTTCAG TTAATTGTCT TCTTGCAATT 
    TTTAGTTTCA GTATCGAACT TTTAATTTGA ATTTGGTAGT TTCGGATTTA 
    TAATAGTATA AATTTAAGAA TGATAGTAGA ACTTTTATCA ATAAATTGTC 
    CTGAAATTTA GTTTGGTTTT TTAGTACACA AAGATGTATA GATGATGGTG 
    TAGTATAAAC CTGCAAAATC AAATTAAAAT TTGCCGTTGA ATTGAGCCAA 
    AATAAGCACT TTCGTAATCC TTACATTAGT TGTACTATTT TTATCTTATT 
    TTGACACGAG ACGATTCGTT CAGATTCTCG CTGCTAATCC TTACATTAGT 
    TGTACTACCG AAAAGTTAAA AGTTAGTATC AAAGACCAAA AAACAAAAAC 
    AAATACACTA TTGGCCATGT TATCAACTTA GAAATGGGAC CCAAAAAAAA 
    TCAAAAGATA GAAATGGTTA TGGGCCAAAG CGTCAATTAC AACATTCGTG 
    AGCCACATGG AACCGTGAAC CGTACAATCA AAGAAGGACC CACCCACCCA 
    ATTGATACTC AAATTACACA TATACTTACA ATTCAATTTT ATTTATAAAC 
    AATATTTGTG TTTTTTGCAC ACATCTACCT ATAACTACAT TGATACGTTG 
    TGCAAAAGCA ATGAACGAAT CTACCGTCCA TCTGTTACAT TTGCATTAAA 
    AGAGTTTGTC CCACGTGTCA TTTGT

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 6812834 [Map]; Strand: c
      • AT5G20181.1 - [+] show detail - unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archa...
        Distance: 275; Region: intergenic
      • AT5G20190.1 - [+] show detail - Tetratricopeptide repeat (TPR)-like superfamily protein
        Distance: -1259; Region: intergenic
    Flanking Genome Sequence: GT19008 - 3-prime edge 
    CGGTAGAGGT ATTTTACCGA CCGTTACCGA CCGTTTTCAT CCCTATGACG 
    TATTGGTCAC GGTTGTTCTT GAATAATTGA GTTGTTCACT TGTCGTCTGA 
    TTAATGTGTT TGGTTGAATT CTAACTTTAA AGTTTTCAGT TAATTGTCTT 
    CTTGCAATTT TTAGTTTCAG TATCGAACTT TTAATTTGAA TTTGGTAGTT 
    TCGGATTTAT AATAGTATAA ATTTAAGAAT GATAGTAGAA CTTTTATCAA 
    TAAATTGTCC TGAAATTTAG TTTGGTTTTT TAGTACACAA AGATGTATAG 
    ATGATGGTGT AGTATAAACC TGCAAAATCA AATTAAAATT TGCCGTTGAA 
    TTGAGCCAAA ATAAGCACTT TCGTAATCCT TACATTAGTT GTACTATTTT 
    TATCTTATTT TGACACGAGA CGATTCGTTC AGATTCTCGC TGCTAATCCT 
    TACATTAGTT GTACTACCGA AAAGTTAAAA GTTAGTATCA AAGACCAAAA 
    AACAAAAACA AATACACTAT TGGCCATGTT ATCAACTTAG AAATGGGACC 
    CAAAAAAAAT CAAAAGATAG AAATGGTTAT GGGCCAAAGC GTCAATTACA 
    ACATTCGTGA GCCACATGGA ACCGTGAACC GTACAATCAA AGAAGGACCC 
    ACCCACCCAA TTGATACTCA AATTACACAT ATACTTACAA TTCAATTTTA 
    TTTATAAACA ATATTTGTGT TTTTTGCACA CATCTACCTA TAACTACATT 
    GATACGTTGT GCAAAAGCAA TGAACGAATC TACCGTCCAT CTGTTACATT 
    TGCATTAAAA GAGTTTGTCC CACGTGTCAT TTGTAGAAAG ATCAGCCGTG 
    AACCTATATT TTCTGGTGAC ACTGCCGTCC ACTTGCAATT CTGCGACCTT 
    C

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 6812762 [Map]; Strand: c
      • AT5G20181.1 - [+] show detail - unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archa...
        Distance: 203; Region: intergenic
      • AT5G20190.1 - [+] show detail - Tetratricopeptide repeat (TPR)-like superfamily protein
        Distance: -1331; Region: intergenic
    Flanking Genome Sequence: GT19008 - 5-prime edge 
    TTTCTCCTAT AGTCCAAGTA AACAAATGAT ATATATATTA AGATCATGTT 
    AATTTTCATT GGCAAGGAAT CCTGAACCTT TGAGAAATTA TCCTTTCTGA 
    ATTTTATATA TTGAGTAGAT TAATTATCCC TTTCGTATTT TTTGTTTCCT 
    GTGAAAGAAA CACAATTATG ATGGTTATCT CTCGAGATCA ATTGGTTAAA 
    ATTGCAGCTC AAAAATGGAA ATTACGAAAG GGTCTGACAA TTATTGGTGA 
    GGTGATTTTT TTGGAATGAA GCTGTTAACG ATTTGACTGA GGGGAAAACT 
    ACAACAAAAA GTAATAAAGA AGGCTTGTTA TGTCCAAAAA TAGTACTGTC 
    CAGAAGTGGG GCCCATGGGA TATGCCTATC GGAGTGGGCT TCCTGTGACC 
    TCTCACACCA CCACGTAGGA CCTACGAGCC GAGTGCTCAA CGGTGGAGAA 
    AGAGAAGGGT CGTTGTCGTT GAGAAGTCTC CGTCTCTCCA GTTTCATTGT 
    ATTTGATTCG CATTTAGTGG GTGTGCTTTG TGCAGCCTCA TTTTGGAATA 
    GTGAAATTTG ACTATAAACA TGCGCAAATG AGCCACAACA TATTTCAAAC 
    TACTTGGTAC GCGGTCAATA CAAATTCAAC CACAATTTGC TCATTTCCTT 
    GGCATGTAAT CGATGTGGAT ATCACTAACC AGAGTTTTCT AAAAGAAAAA 
    CATATTGATC CCTAACATAT GCTCCAGTGG AAAATGTAAA AACAAATACT 
    CGAGTGTCAT AATATATCTC T

AT5G20181.1

Model type
Protein coding
Computational Description
unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G20190.1

Model type
Protein coding
Short Description
Tetratricopeptide repeat (TPR)-like superfamily protein
Computational Description
Tetratricopeptide repeat (TPR)-like superfamily protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide repeat-containing (InterPro:IPR013026); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT1G80130.1); Has 458 Blast hits to 304 proteins in 39 species: Archae - 0; Bacteria - 85; Metazoa - 7; Fungi - 10; Plants - 317; Viruses - 0; Other Eukaryotes - 39 (source: NCBI BLink).
Link
InterPro Scan - TAIR