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GT19009

CSHL Arabidopsis genetrap mutant lines

Original: GT19009

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT19009

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 30270479 [Map]; Strand: c
      • AT1G80500.1 - [+] show detail - SNARE-like superfamily protein
        Distance: -50; Region: promoter
    Flanking Genome Sequence: GT19009 - 5-prime edge 
    CGAGAACTTT TTAGATACGG GTGAGAAGTT TGGGTTTGTG ACCTGAATTT 
    TGGAGGAAGA AAGGGGATCT GCGGTGTGAT TCAATATTGG GCTATTGGGT 
    CTTTAACGGG CTTGTCATTT CGGTCCATTA TATAATACTG AAAGTGGCTA 
    AAAGAATGTT GTGTTAATCC CAACGAGATG GGAAGACGAC TAGAAACCAA 
    CCCCAACGAA TTACCAACAA GTTTGATATG TAGTACATAG ACTAATTTTT 
    ATGAAAAAAA TAGTTTGGTC TATGACAAAA TATTATCCGT ACGTTTTGAA 
    ATAAAAAGGT GTCATTACAA ATCTTTTGGT TAATTCGCTC AAAAGTATAA 
    TGAAGTTTGA TAGTAGACAA ATATCAATCC AAGCGGCGTT GGGATAACAA 
    GAGAACCGAA ATAAATAAAC AAATTTGATG GTGTCGCTGT CGTCGTCATA 
    TAACAAAAAT CAAATTTTCC CAACAAAAAA TAGTTAGCGG CAATGTCTTG 
    GATACGTGGA AATTAGTCTA TCTATATATA CATACGTGCT TATTTGGGCT 
    AAATAAATAA ATAGTGCAAA TAATTATGGC TTA

AT1G80500.1

Model type
Protein coding
Short Description
SNARE-like superfamily protein
Computational Description
SNARE-like superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: transport, ER to Golgi vesicle-mediated transport; LOCATED IN: intracellular; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Sedlin (InterPro:IPR006722), Longin-like (InterPro:IPR011012); BEST Arabidopsis thaliana protein match is: SNARE-like superfamily protein (TAIR:AT2G20930.1); Has 584 Blast hits to 580 proteins in 189 species: Archae - 0; Bacteria - 0; Metazoa - 289; Fungi - 112; Plants - 97; Viruses - 0; Other Eukaryotes - 86 (source: NCBI BLink).
Link
InterPro Scan - TAIR