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GT19032

CSHL Arabidopsis genetrap mutant lines

Original: GT19032

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT19032

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 19447033 [Map]; Strand: c
      • AT2G47390.1 - [+] show detail - Prolyl oligopeptidase family protein
        Distance: -668; Region: promoter
      • AT2G47400.1 - [+] show detail - CP12 domain-containing protein 1
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: GT19032 - 3-prime edge 
    TTTTACCGAC CGTTACCGAC CGTTTTCATC CCTAGTTGTG GTTAAGGCTA 
    CATCGGAAGG AGAGATATCG GAGAAGGTGG AGAAGAGTAT ACAAGAAGCT 
    AAGGAGACAT GCGCTGATGA TCCGGTGAGC GGGGAGTGTG TAGCGGCTTG 
    GGACGAGGTG GAGGAGCTGA GTGCGGCGGC GAGTCATGCT AGGGACAAGA 
    AGAAAGCTGG TGGCTCCGAT CCTTTGGAAG AGTATTGCAA TGATAATCCT 
    GAGACTGATG AGTGTCGTAC TTATGATAAT TAAAAAATAT GTTTTTGATG 
    TTCGAATTAT GAAACTTTAG GTATGGATCA ATGTTTGTTC TTCTGTCCCT 
    CGATGATATG TTTGTGTTTT TGGTTTGGTT GATGATTGTA ATGTGATAAA 
    TGAATATGAA TAGTACAATA CACAACATAT GTTTCATAAT GTGTTTGGTT 
    CGATTACATT TGCAGTTTCG TGAAATTGAT AATAAAAAAC TCAATTAAGT 
    TTAGATGAGG CTGAGATGAT CTTAGGTCAC TCGCATACGT TCCTTATTAT 
    TTTTTTGTGG ATGTGGAGAT GTATGTGTCA AAACGACGTT GAGCCGAGAG 
    AAAGATGAAT TGATCGAGAG TTTCTTAGAC GGTTTTAAAA TTGCTGCCTT 
    GCTGGTATGG GAATTAATCT TTGGTTTCAA CAAGATGGGT AACAACAAAC 
    AAGCCCATGT AATTATGTTG ATGCAGTGTA ATGGGCTTTA TCAAGCATGG 
    GCCGATGTAC AAATTTGACA TATAGAATAG AACCAGTTTG

  • 5 prime edge [+] show sequence

    Not mapped

    Flanking Genome Sequence: GT19032 - 5-prime edge 
    GGACTAATAC ACGAGCCACG GTCGACGACC CTCGTGGAGT CGCG

AT2G47390.1

Model type
Protein coding
Short Description
Prolyl oligopeptidase family protein
Computational Description
Prolyl oligopeptidase family protein; FUNCTIONS IN: serine-type peptidase activity, serine-type endopeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: chloroplast stroma, chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S9, prolyl oligopeptidase, catalytic domain (InterPro:IPR001375), Peptidase S9A, oligopeptidase, N-terminal beta-propeller (InterPro:IPR004106); BEST Arabidopsis thaliana protein match is: acylaminoacyl-peptidase-related (TAIR:AT4G14570.1); Has 4880 Blast hits to 4877 proteins in 846 species: Archae - 179; Bacteria - 3027; Metazoa - 477; Fungi - 49; Plants - 145; Viruses - 0; Other Eukaryotes - 1003 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G47400.1

Model type
Protein coding
Short Description
CP12 domain-containing protein 1
Curator Summary
CP12-1 encodes a small peptide found in the chloroplast stroma. It belongs to the CP12 gene family thought to be involved in the formation of a supramolecular complex with glyceraldehyde-3-phosphate dehydrogenase (GAPDH) and phosphoribulokinase (PRK) embedded in the Calvin cycle.
Computational Description
CP12 domain-containing protein 1 (CP12-1); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: negative regulation of reductive pentose-phosphate cycle; LOCATED IN: chloroplast stroma, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function CP12 (InterPro:IPR003823); BEST Arabidopsis thaliana protein match is: CP12 domain-containing protein 2 (TAIR:AT3G62410.1); Has 264 Blast hits to 264 proteins in 70 species: Archae - 0; Bacteria - 128; Metazoa - 0; Fungi - 0; Plants - 120; Viruses - 0; Other Eukaryotes - 16 (source: NCBI BLink).
Link
InterPro Scan - TAIR