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GT19067

CSHL Arabidopsis genetrap mutant lines

Original: GT19067

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT19067

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 17128374 [Map]; Strand: w
      • AT3G46520.1 - [+] show detail - actin-12
        Distance: 0; Region: intron1 (5UTR)
    Flanking Genome Sequence: GT19067 - 5-prime edge
    TCTTTCTCTT CTTCTAGTTC TACGAAAATT CATCAGGTAC ATGTTATTTT 
    TTTTGTTTAT TTGATGTCAA AATTTTGAAC ACAAGGATGC AAAACCAAAT
    TAAATGTAAC GCTAATGCGT TTGATTATGG TATACGTAAC GAATTAGATT
    TAAAGGTTAC ATTTTCTTGT TTTAGATTTA GTTATGAGAT TGGCATTAAC
    CATTGGTGTT TCCTTTGAAT TTGCTATGTT TCTTATGTTG ATGTAATCAG
    CTATAG

AT3G46520.1

Model type
Protein coding
Short Description
actin-12
Curator Summary
Member of actin subclass composed of ACT12 and ACT4. RNA is expressed at very low levels in vegetative organs, low levels in flowers and very high levels in pollen. Expression of an ACT12/GUS fusion was found in vascular tissues, tapetum, developing and mature pollen, the root cap and in a ring of pericycle tissues during lateral root initiation and early development.
Computational Description
actin-12 (ACT12); FUNCTIONS IN: structural constituent of cytoskeleton; INVOLVED IN: cytoskeleton organization; LOCATED IN: mitochondrion, cytoskeleton; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Actin, conserved site (InterPro:IPR004001), Actin/actin-like (InterPro:IPR004000), Actin/actin-like conserved site (InterPro:IPR020902); BEST Arabidopsis thaliana protein match is: actin 4 (TAIR:AT5G59370.2); Has 15176 Blast hits to 14784 proteins in 3040 species: Archae - 8; Bacteria - 8; Metazoa - 5711; Fungi - 5220; Plants - 1602; Viruses - 2; Other Eukaryotes - 2625 (source: NCBI BLink).
Link
InterPro Scan - TAIR