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GT19090

CSHL Arabidopsis genetrap mutant lines

Original: GT19090

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT19090

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 28863350 [Map]; Strand: w
      • AT1G76870.1 - [+] show detail - BEST Arabidopsis thaliana protein match is: sequence-specific DNA binding tra...
        Distance: 4943; Region: intergenic
      • AT1G76880.1 - [+] show detail - Duplicated homeodomain-like superfamily protein
        Distance: -2150; Region: intergenic
    Flanking Genome Sequence: GT19090 - 5-prime edge 
    TGATATTAAA ATAATTTGCA GGGGGGACAA ATCCAGATCA GTAATGAGGA 
    TGGTTTAGTT TATTAATGAT TTAAAGTCTT AAAATGTTGA GAGCTAATAA 
    AATAGATTAA TAGCTTAAAA AGCCTCCATG ATTAAAGGTC AATGGGATCC 
    ACGTTAGGGA CAATTTAGTA ATTTCAAATA ATA

AT1G76870.1

Model type
Protein coding
Computational Description
BEST Arabidopsis thaliana protein match is: sequence-specific DNA binding transcription factors (TAIR:AT1G21200.1); Has 406 Blast hits to 351 proteins in 76 species: Archae - 0; Bacteria - 2; Metazoa - 137; Fungi - 14; Plants - 127; Viruses - 0; Other Eukaryotes - 126 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G76880.1

Model type
Protein coding
Short Description
Duplicated homeodomain-like superfamily protein
Computational Description
Duplicated homeodomain-like superfamily protein; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), MYB-like (InterPro:IPR017877); BEST Arabidopsis thaliana protein match is: Duplicated homeodomain-like superfamily protein (TAIR:AT1G76890.2); Has 4096 Blast hits to 3293 proteins in 319 species: Archae - 0; Bacteria - 232; Metazoa - 1014; Fungi - 378; Plants - 799; Viruses - 55; Other Eukaryotes - 1618 (source: NCBI BLink).
Link
InterPro Scan - TAIR