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GT19128

CSHL Arabidopsis genetrap mutant lines

Original: GT19128

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT19128

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 6812833 [Map]; Strand: c
      • AT5G20181.1 - [+] show detail - unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archa...
        Distance: 274; Region: intergenic
      • AT5G20190.1 - [+] show detail - Tetratricopeptide repeat (TPR)-like superfamily protein
        Distance: -1260; Region: intergenic
    Flanking Genome Sequence: GT19128 - 3-prime edge
    AACGGTAGAG GTTTTTACCG ACCGTTACCG ACCGTTTTCA TCCCTATGAC 
    GAATTGGTCA CGGCTGTTCT TGAATAATTG AGTTGTTCAC TTGTCGCCTG
    ATGGATGTGA TTGGCCGAAT TCTAACTTTA AA
  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 24777806 [Map]; Strand: c
      • AT5G61650.1 - [+] show detail - CYCLIN P4;2
        Distance: -440; Region: promoter
    Flanking Genome Sequence: GT19128 - 5-prime edge
    CTTTCTCCCT GCTAAGATTA GTTTTGAATT ACAATCTAGT GATTATGATC 
    ATCGCATGGT TAAGCCATTG GCCTGAGAAT TTATTATTAA TTAAACCGAC
    TTCTGGTGAT ATTAACTAAC TTAGCTTCTA AAACATGGAA AATTATAGAA
    ATTTACAAGA GAAGAAAAAA GCGGGAAAAC CCAATGGAAA TATAGGCAAT
    TTATAGAGTT TTAGGGTGAA TTTGTTTTAG CGTACTAAAC TTTCTTTTTT
    TAAGGACTAA GGAGACTTCT GATTTCTGAA TCCATCAAAA GGTATAAATT
    TTCTATCAAA AATGATTGTA GCTTGCAGGA GAAAAAAAAC TCTTAAGCTT
    GAGTTTTAAA CATTGGGAGG ATATGATTAA TTTGTTGTGT TTGAGAAAGA
    ATATACAATA ATAGTAACTT AAGATTTGGT TTTTCCTTGG GGTTAAGTTG
    GTTTACCTGC CAAACTAGCC CTTAAGTTTT CATCCCACCT TTCGGAATTT
    CTCTTAAAGC TTTACAAGAA TTTCTATTAG TCTGAATATA AATATAGATG
    TCAGGATATC TTAACATTTC GCACCAAAAA AAAAGATATC TTAACAAAGT
    ACTGAAGAAA ATATATAGTA TAATAATTGA AGTGAAATCA TACAATTGAG
    TTAGAAACTA GCTAGCAAAA ATTACTTTAA ATTATTGCAA TTAGTAATTG
    TTTTATTTTA GATGTTTCAT GAAACATATT TTTTCTTTT

AT5G20181.1

Model type
Protein coding
Computational Description
unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G20190.1

Model type
Protein coding
Short Description
Tetratricopeptide repeat (TPR)-like superfamily protein
Computational Description
Tetratricopeptide repeat (TPR)-like superfamily protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide repeat-containing (InterPro:IPR013026); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT1G80130.1); Has 458 Blast hits to 304 proteins in 39 species: Archae - 0; Bacteria - 85; Metazoa - 7; Fungi - 10; Plants - 317; Viruses - 0; Other Eukaryotes - 39 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G61650.1

Model type
Protein coding
Short Description
CYCLIN P4;2
Curator Summary
The P-type cyclins (CYCPs) share a conserved central region of 100 amino acids ('cyclin box') displaying homology to the corresponding region of the PHO80 cyclin from Saccharomyces cerevisiae and the related G1 cyclins from Trypanosoma cruzi and T. brucei.
Computational Description
CYCLIN P4;2 (CYCP4;2); CONTAINS InterPro DOMAIN/s: Negative regulatory factor PREG (InterPro:IPR012389), Cyclin-like (InterPro:IPR011028), Cyclin-related 2 (InterPro:IPR013922), Cyclin (InterPro:IPR006670); BEST Arabidopsis thaliana protein match is: cyclin p4;3 (TAIR:AT5G07450.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR