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GT19148

CSHL Arabidopsis genetrap mutant lines

Original: GT19148

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT19148

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 2364584 [Map]; Strand: w
      • AT3G07390.1 - [+] show detail - auxin-responsive family protein
        Distance: -717; Region: promoter
    Flanking Genome Sequence: GT19148 - 5-prime edge
    TCCTACTTTC TCCCTGCTCA AACCAATTCT CATGAAATGA CCTCAAGGAA 
    AATTCCGATA TTACCCGCCA TTGTTCCACG TTATTGACAC TGTGTCGTTT
    GGAGAAAATC AAATATCTCG TCCCTAGACA CACATTATTC CTTTCCAAAT
    TCGAAATTGA ATGTAAGCTG TAACTAACAA AACTTGTATT ATTTGGAAAA
    TTATCGATCT TTTTTTTTGG TAAAAGAAAA ATATCCGACC TAAATTTTTT
    TCCCCCCTTG CCCCCCCCCT AAAAATTCCC CCCCCTCCAA AACAGGAAAA
    ATTTACCATT TTTCCTTAAC CCCGGAAAAT TTTTCTTTTT AACCGGCCTC
    CGAAAACAAA AAATTTTTTC CTATTTTTAA ACAAAAAATT TTTCCACCAA
    ACCTCCAAGA AAAAAAGCCT TGCTGGAAAA CAAAAAAAAA AATTCCACCC
    CCTTGGCCGG GGGCCATTTT TTCCCCAAAA ACCGGGTGGA CTTATAGGAG
    GGGATTAGGC CTCCTTCCTA TAAAAAAATT TTAACCCCAG GAAAAATTTT
    TTCTTTATTC CTAAAAAAAT GAAAAAAAAA TTTTTCTTCT AATTAAACCT
    TTTAATAAAA AAAAAAA

AT3G07390.1

Model type
Protein coding
Short Description
auxin-responsive family protein
Curator Summary
isolated from differential screening of a cDNA library from auxin-treated root culture. sequence does not show homology to any known proteins and is predicted to be extracellular.
Computational Description
Auxin-Induced in Root cultures 12 (AIR12); FUNCTIONS IN: extracellular matrix structural constituent; INVOLVED IN: response to auxin stimulus, lateral root morphogenesis, extracellular matrix organization; LOCATED IN: extracellular region, anchored to plasma membrane, plasma membrane, anchored to membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF568, DOMON-like (InterPro:IPR007613), DOMON related (InterPro:IPR005018); BEST Arabidopsis thaliana protein match is: Auxin-responsive family protein (TAIR:AT3G25290.2); Has 254 Blast hits to 254 proteins in 21 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 248; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).
Link
InterPro Scan - TAIR