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GT19167

CSHL Arabidopsis genetrap mutant lines

Original: GT19167

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT19167

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 2683811 [Map]; Strand: w
      • AT1G08470.1 - [+] show detail - strictosidine synthase-like 3
        Distance: 0; Region: exon1 (CDS)
      • AT1G08480.1 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biolo...
        Distance: -423; Region: promoter
    Flanking Genome Sequence: GT19167 - 5-prime edge 
    GACCTTGCGG ATCGAAAGCA ATGCTCTCGG GACCTTGAAC CTCGTTAAGA 
    AACCTGATCT CTGAATTCTG CAACAGATTC TGGCGGTCTC TCTCCTTTGG 
    AAGTGACGAT AACGGAGGCA TGTCAATCTT GTAAGTTTTG AAATCCGGGA 
    ACTTGGAAAT GGAGCTGTGA CTGAAGGGAT CGATAGCGCA ATAGATGGCA 
    AAGACGAGAA AGATCTTCGC GAGTATGCTC ATGGCCATTT TCTTTGTACG 
    AGGGATGATG ATGATGATTT GAAGAAGAAA ATGGTTGGGG AAGTTTTAAG 
    GTAGAGAAGT AGAGAAGAAG TAGTTGAAGT AGAGTACACT TTTCTGGTTG 
    AAAATTTAAA ACTTTTCTCA ATTGCTGCTC TTTTTCGATA TATTAAGAAA 
    AGTCAAGGAG CAATTGCAAA TCGGCTAATC TGATGGCAAC CCGGTATTAA 
    ATTAAAAAAA GAAACATGAA AACCGGGTGA ACCGGATCGA CCTTCCATTT 
    TTTCGGTAGA CCAGTTTTAT TTATTCTGCA AATAATAATC GTCTTCAATC 
    AGAGAAAAAG TTTGCAGTGA GAAGGAGATT GATTAATCGA TCTGAGAAAG 
    ATGGGAGATT CGGAGTCATT TGTTGGGAAA AATTGGAATG GATTGAAGGA 
    TTTCTGGAGT GATAGGTTAT CATTTTTCGA AAATTACACC A

AT1G08470.1

Model type
Protein coding
Short Description
strictosidine synthase-like 3
Curator Summary
Although this enzyme is predicted to encode a strictosidine synthase (SS), it lacks a conserved catalytic glutamate residue found in active SS enzymes and it is not expected to have SS activity.
Computational Description
strictosidine synthase-like 3 (SSL3); FUNCTIONS IN: strictosidine synthase activity; INVOLVED IN: alkaloid biosynthetic process, biosynthetic process; LOCATED IN: endoplasmic reticulum, plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Strictosidine synthase, conserved region (InterPro:IPR018119), Strictosidine synthase (InterPro:IPR004141), Six-bladed beta-propeller, TolB-like (InterPro:IPR011042); BEST Arabidopsis thaliana protein match is: Calcium-dependent phosphotriesterase superfamily protein (TAIR:AT5G22020.1); Has 1252 Blast hits to 1238 proteins in 269 species: Archae - 3; Bacteria - 366; Metazoa - 225; Fungi - 17; Plants - 480; Viruses - 0; Other Eukaryotes - 161 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G08480.1

Model type
Protein coding
Computational Description
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion, plasma membrane, plastid, vacuole; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 15 growth stages; Has 39 Blast hits to 39 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 39; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR